Gm49107 Gene Detail

Summary

• Symbol
  Gm49107
• Name
  predicted gene, 49107

• Feature Type
  lncRNA gene
• IDs
  MGI:6118505
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr15:11630815-11719184 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  2547 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6118505	lncRNA gene	Chr15:11630815-11719184 (+)
129S1/SvImJ	ENSMUSG00200034044	lncRNA gene	Chr15:8623982-8631575 (+)
A/J	ENSMUSG00195010248	lncRNA gene	Chr15:8517046-8522681 (+)
AKR/J	ENSMUSG00220022622	lncRNA gene	Chr15:8449468-8457064 (+)
BALB/cJ	ENSMUSG00180035441	lncRNA gene	Chr15:8520332-8527928 (+)
C3H/HeJ	ENSMUSG00175033464	lncRNA gene	Chr15:8677536-8685132 (+)
C57BL/6NJ	ENSMUSG00215027202	lncRNA gene	Chr15:8563220-8570816 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005026414	lncRNA gene	Chr15:8655701-8663413 (+)
CBA/J	ENSMUSG00210025991	lncRNA gene	Chr15:8662574-8670170 (+)
DBA/2J	ENSMUSG00185032424	lncRNA gene	Chr15:8619648-8627244 (+)
FVB/NJ	ENSMUSG00205033654	lncRNA gene	Chr15:8498091-8503726 (+)
JF1/MsJ	ENSUMUG00000038612	lncRNA gene	Chr15:8730835-8738107 (+)
LP/J	ENSMUSG00230016122	lncRNA gene	Chr15:12117023-12124616 (+)
NOD/ShiLtJ	ENSMUSG00190010421	lncRNA gene	Chr15:8594926-8602519 (+)
NZO/HlLtJ	ENSMUSG00225024239	lncRNA gene	Chr15:12340749-12348345 (+)
PWK/PhJ	ENSLUMG00010037422	lncRNA gene	Chr15:8796043-8803352 (+)
SPRET/EiJ	ENSMSPG00010034263	lncRNA gene	Chr15:8820582-8826288 (+)
WSB/EiJ	ENSIUOG00005030137	lncRNA gene	Chr15:8583850-8591446 (+)

Homology

• Gene Tree
  Gm49107
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26

• Ensembl
  ENSMUSG00000115804 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000115804	Ensembl Gene Model | MGI Sequence Detail	88370	C57BL/6J
transcript	ENSMUST00000345451	Ensembl | MGI Sequence Detail	1313	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;