Gm49085 Gene Detail

Summary

• Symbol
  Gm49085
• Name
  predicted gene, 49085

• Feature Type
  lncRNA gene
• IDs
  MGI:6118472
  NCBI Gene: 115488513
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr15:37960715-38011932 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1126 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6118472	lncRNA gene	Chr15:37960715-38013044 (+)
129S1/SvImJ	ENSMUSG00200027757	lncRNA gene	Chr15:34957278-34964072 (+)
A/J	ENSMUSG00195037983	lncRNA gene	Chr15:34882970-34888713 (+)
AKR/J	ENSMUSG00220030269	lncRNA gene	Chr15:34796848-34802591 (+)
BALB/cJ	ENSMUSG00180032578	lncRNA gene	Chr15:34867809-34873556 (+)
C3H/HeJ	ENSMUSG00175027947	lncRNA gene	Chr15:35066412-35072159 (+)
C57BL/6NJ	ENSMUSG00215023224	lncRNA gene	Chr15:34874334-34880081 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005010864	lncRNA gene	Chr15:34870806-34877459 (+)
CBA/J	ENSMUSG00210018235	lncRNA gene	Chr15:34980903-34986650 (+)
DBA/2J	ENSMUSG00185036522	lncRNA gene	Chr15:34961741-34967488 (+)
FVB/NJ	ENSMUSG00205034351	lncRNA gene	Chr15:34849387-34855130 (+)
JF1/MsJ	ENSUMUG00000033849	lncRNA gene	Chr15:34851279-34857954 (+)
LP/J	ENSMUSG00230012893	lncRNA gene	Chr15:38338386-38345180 (+)
NOD/ShiLtJ	ENSMUSG00190031313	lncRNA gene	Chr15:34925307-34932101 (+)
NZO/HlLtJ	ENSMUSG00225032108	lncRNA gene	Chr15:38653150-38658897 (+)
PWK/PhJ	ENSLUMG00010032563	lncRNA gene	Chr15:35002217-35008905 (+)
SPRET/EiJ	ENSMSPG00010013401	lncRNA gene	Chr15:35666538-35673202 (+)
WSB/EiJ	ENSIUOG00005033114	lncRNA gene	Chr15:34973582-34980379 (+)

Homology

• Gene Tree
  Gm49085
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  7
• Gene trapped
  7
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000115249 (Evidence)
• NCBI Gene
  115488513

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000115249	Ensembl Gene Model | MGI Sequence Detail	51218	C57BL/6J
transcript	ENSMUST00000228937	Ensembl | MGI Sequence Detail	5748	Not Applicable

References

• Summaries
  All 4

  Phenotypes 1
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;