Gm49079 Pseudogene Detail

Summary

• Symbol
  Gm49079
• Name
  predicted gene, 49079

• Feature Type
  pseudogene
• IDs
  MGI:6118465
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr15:46301928-46302354 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  102 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6118465	pseudogene	Chr15:46301928-46302354 (+)
129S1/SvImJ	ENSMUSG00200019602	pseudogene	Chr15:43237820-43238246 (+)
A/J	ENSMUSG00195005853	pseudogene	Chr15:43237113-43237539 (+)
AKR/J	ENSMUSG00220018292	pseudogene	Chr15:43205875-43206301 (+)
BALB/cJ	ENSMUSG00180004950	pseudogene	Chr15:43224706-43225132 (+)
C3H/HeJ	ENSMUSG00175020906	pseudogene	Chr15:43457816-43458242 (+)
C57BL/6NJ	ENSMUSG00215003287	pseudogene	Chr15:43243195-43243621 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005013900	pseudogene	Chr15:43191262-43191688 (+)
CBA/J	ENSMUSG00210026734	pseudogene	Chr15:43338993-43339419 (+)
DBA/2J	ENSMUSG00185013144	pseudogene	Chr15:43304562-43304988 (+)
FVB/NJ	ENSMUSG00205015707	pseudogene	Chr15:43263314-43263740 (+)
JF1/MsJ	ENSUMUG00000024807	pseudogene	Chr15:43114564-43114990 (+)
LP/J	ENSMUSG00230014572	pseudogene	Chr15:46614995-46615421 (+)
NOD/ShiLtJ	ENSMUSG00190008664	pseudogene	Chr15:43294040-43294466 (+)
NZO/HlLtJ	ENSMUSG00225037990	pseudogene	Chr15:46970184-46970610 (+)
PWK/PhJ	ENSLUMG00010012527	pseudogene	Chr15:43316623-43317049 (+)
SPRET/EiJ	ENSMSPG00010007043	pseudogene	Chr15:44235777-44236198 (+)
WSB/EiJ	ENSIUOG00005021974	pseudogene	Chr15:43341308-43341734 (+)

Homology

• Gene Tree
  Gm49079
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000115350 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000115350	Ensembl Gene Model | MGI Sequence Detail	427	C57BL/6J
transcript	ENSMUST00000226594	Ensembl | MGI Sequence Detail	427	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;