Gm49077 Gene Detail

Summary

• Symbol
  Gm49077
• Name
  predicted gene, 49077

• Feature Type
  lncRNA gene
• IDs
  MGI:6118462
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr15:38519030-38520295 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  98 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6118462	lncRNA gene	Chr15:38519030-38520295 (+)
129S1/SvImJ	ENSMUSG00200028170	lncRNA gene	Chr15:35518229-35519494 (+)
A/J	ENSMUSG00195036816	lncRNA gene	Chr15:35445646-35446911 (+)
AKR/J	ENSMUSG00220031026	lncRNA gene	Chr15:35359507-35360772 (+)
BALB/cJ	ENSMUSG00180033965	lncRNA gene	Chr15:35426223-35427488 (+)
C3H/HeJ	ENSMUSG00175028315	lncRNA gene	Chr15:35621393-35622658 (+)
C57BL/6NJ	ENSMUSG00215028531	lncRNA gene	Chr15:35432694-35433959 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005010729	lncRNA gene	Chr15:35443262-35444525 (+)
CBA/J	ENSMUSG00210018368	lncRNA gene	Chr15:35539237-35540502 (+)
DBA/2J	ENSMUSG00185036408	lncRNA gene	Chr15:35520112-35521377 (+)
FVB/NJ	ENSMUSG00205034036	lncRNA gene	Chr15:35412041-35413306 (+)
JF1/MsJ	ENSUMUG00000036279	lncRNA gene	Chr15:35416418-35417684 (+)
LP/J	ENSMUSG00230013011	lncRNA gene	Chr15:38899298-38900563 (+)
NOD/ShiLtJ	ENSMUSG00190030679	lncRNA gene	Chr15:35486270-35487535 (+)
NZO/HlLtJ	ENSMUSG00225031811	lncRNA gene	Chr15:39207488-39208753 (+)
PWK/PhJ	ENSLUMG00010033566	lncRNA gene	Chr15:35565539-35566803 (+)
SPRET/EiJ	ENSMSPG00010013016	lncRNA gene	Chr15:36225591-36226852 (+)
WSB/EiJ	ENSIUOG00005033394	lncRNA gene	Chr15:35535220-35536485 (+)

Homology

• Gene Tree
  Gm49077
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000115546 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000115546	Ensembl Gene Model | MGI Sequence Detail	1266	C57BL/6J
transcript	ENSMUST00000228225	Ensembl | MGI Sequence Detail	1266	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm49077:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr131119	Chr15:38518752-38518757 (+)	-275 bp
Tssr131120	Chr15:38518987-38519040 (+)	-16 bp