Gm49067 Gene Detail

Summary

• Symbol
  Gm49067
• Name
  predicted gene, 49067

• Feature Type
  lncRNA gene
• IDs
  MGI:6118449
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr14:55919342-55949879 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  673 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6118449	lncRNA gene	Chr14:55919342-55949879 (+)
129S1/SvImJ	ENSMUSG00200043818	lncRNA gene	Chr14:44507080-44537454 (+)
A/J	ENSMUSG00195033892	lncRNA gene	Chr14:44723807-44754187 (+)
AKR/J	ENSMUSG00220036902	lncRNA gene	Chr14:44051700-44082071 (+)
BALB/cJ	ENSMUSG00180053782	lncRNA gene	Chr14:44347526-44377902 (+)
C3H/HeJ	ENSMUSG00175052643	lncRNA gene	Chr14:46029865-46060248 (+)
C57BL/6NJ	ENSMUSG00215048984	lncRNA gene	Chr14:44242589-44272966 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005049603	lncRNA gene	Chr14:46025570-46055324 (+)
CBA/J	ENSMUSG00210049005	lncRNA gene	Chr14:44710404-44740783 (+)
DBA/2J	ENSMUSG00185055937	lncRNA gene	Chr14:49777671-49808013 (+)
FVB/NJ	ENSMUSG00205047270	lncRNA gene	Chr14:44120952-44151322 (+)
JF1/MsJ	ENSUMUG00000048395	lncRNA gene	Chr14:61010068-61040419 (+)
LP/J	ENSMUSG00230053402	lncRNA gene	Chr14:61872948-61903322 (+)
NOD/ShiLtJ	ENSMUSG00190050774	lncRNA gene	Chr14:44484346-44514718 (+)
NZO/HlLtJ	ENSMUSG00225046959	lncRNA gene	Chr14:52163312-52193679 (+)
PWK/PhJ	ENSLUMG00010050507	lncRNA gene	Chr14:43933053-43963434 (+)
SPRET/EiJ	ENSMSPG00010048016	lncRNA gene	Chr14:47336409-47366057 (+)
WSB/EiJ	ENSIUOG00005044968	lncRNA gene	Chr14:43925235-43955622 (+)

Homology

• Gene Tree
  Gm49067
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25

• Ensembl
  ENSMUSG00000115154 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000115154	Ensembl Gene Model | MGI Sequence Detail	30538	C57BL/6J
transcript	ENSMUST00000328640	Ensembl | MGI Sequence Detail	861	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;