Gm49060 Pseudogene Detail

Summary

• Symbol
  Gm49060
• Name
  predicted gene, 49060

• Feature Type
  pseudogene
• IDs
  MGI:6118439
  NCBI Gene: 115488295
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr14:86442182-86442812 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  106 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6118439	pseudogene	Chr14:86441924-86442829 (+)
129S1/SvImJ	ENSMUSG00200013043	pseudogene	Chr14:74905766-74906396 (+)
A/J	ENSMUSG00195011360	pseudogene	Chr14:75112559-75113189 (+)
AKR/J	ENSMUSG00220008588	pseudogene	Chr14:74466227-74466857 (+)
BALB/cJ	ENSMUSG00180009918	pseudogene	Chr14:74615686-74616316 (+)
C3H/HeJ	ENSMUSG00175009578	pseudogene	Chr14:76437112-76437742 (+)
C57BL/6NJ	ENSMUSG00215004816	pseudogene	Chr14:74633138-74633768 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005002361	pseudogene	Chr14:76256275-76256896 (+)
CBA/J	ENSMUSG00210005025	pseudogene	Chr14:75119137-75119767 (+)
DBA/2J	ENSMUSG00185009469	pseudogene	Chr14:80238842-80239472 (+)
FVB/NJ	ENSMUSG00205010480	pseudogene	Chr14:74331976-74332606 (+)
JF1/MsJ	ENSUMUG00000014010	pseudogene	Chr14:91327831-91328387 (+)
LP/J	ENSMUSG00230002613	pseudogene	Chr14:92207017-92207647 (+)
NOD/ShiLtJ	ENSMUSG00190002440	pseudogene	Chr14:74874429-74875059 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010002200	pseudogene	Chr14:74196413-74197043 (+)
SPRET/EiJ	ENSMSPG00010000221	pseudogene	Chr14:77888540-77889127 (+)
WSB/EiJ	ENSIUOG00005004519	pseudogene	Chr14:74207691-74208321 (+)

Homology

• Gene Tree
  Gm49060
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000115836 (Evidence)
• NCBI Gene
  115488295

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000115836	Ensembl Gene Model | MGI Sequence Detail	631	C57BL/6J
transcript	ENSMUST00000227856	Ensembl | MGI Sequence Detail	631	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;