Gm49048 Gene Detail

Summary

• Symbol
  Gm49048
• Name
  predicted gene, 49048

• Feature Type
  lncRNA gene
• IDs
  MGI:6118424
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr14:82323310-82396899 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  2679 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6118424	lncRNA gene	Chr14:82323310-82396899 (-)
129S1/SvImJ	ENSMUSG00200010415	lncRNA gene	Chr14:70843570-70846025 (-)
A/J	ENSMUSG00195004055	lncRNA gene	Chr14:71043305-71045760 (-)
AKR/J	ENSMUSG00220007327	lncRNA gene	Chr14:70329979-70332434 (-)
BALB/cJ	ENSMUSG00180022913	lncRNA gene	Chr14:70542759-70545218 (-)
C3H/HeJ	ENSMUSG00175009489	lncRNA gene	Chr14:72357268-72359723 (-)
C57BL/6NJ	ENSMUSG00215023118	lncRNA gene	Chr14:70545379-70547834 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005002381	lncRNA gene	Chr14:72159015-72161493 (-)
CBA/J	ENSMUSG00210010372	lncRNA gene	Chr14:70958079-70960534 (-)
DBA/2J	ENSMUSG00185009309	lncRNA gene	Chr14:76126152-76128607 (-)
FVB/NJ	ENSMUSG00205026307	lncRNA gene	Chr14:70277734-70280189 (-)
JF1/MsJ	ENSUMUG00000019511	lncRNA gene	Chr14:87292314-87294789 (-)
LP/J	ENSMUSG00230002918	lncRNA gene	Chr14:88159398-88161853 (-)
NOD/ShiLtJ	ENSMUSG00190011511	lncRNA gene	Chr14:70797021-70799492 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010011096	lncRNA gene	Chr14:70143100-70145555 (-)
SPRET/EiJ	ENSMSPG00010000254	lncRNA gene	Chr14:73777027-73779484 (-)
WSB/EiJ	ENSIUOG00005024051	lncRNA gene	Chr14:70159841-70162316 (-)

Homology

• Gene Tree
  Gm49048
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000115825 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000115825	Ensembl Gene Model | MGI Sequence Detail	73590	C57BL/6J
transcript	ENSMUST00000291787	Ensembl | MGI Sequence Detail	996	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm49048:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr129923	Chr14:82379970-82380012 (-)	16,908 bp