Gm49046 Gene Detail

Summary

• Symbol
  Gm49046
• Name
  predicted gene, 49046

• Feature Type
  lncRNA gene
• IDs
  MGI:6118421
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr14:81338166-81360807 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  864 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6118421	lncRNA gene	Chr14:81338166-81360807 (+)
129S1/SvImJ	ENSMUSG00200010487	lncRNA gene	Chr14:69786322-69808919 (+)
A/J	ENSMUSG00195004418	lncRNA gene	Chr14:69911161-69933770 (+)
AKR/J	ENSMUSG00220007377	lncRNA gene	Chr14:69274309-69296892 (+)
BALB/cJ	ENSMUSG00180022729	lncRNA gene	Chr14:69502785-69525376 (+)
C3H/HeJ	ENSMUSG00175031030	lncRNA gene	Chr14:71312660-71335259 (+)
C57BL/6NJ	ENSMUSG00215024072	lncRNA gene	Chr14:69505418-69528019 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005032162	lncRNA gene	Chr14:71120123-71144994 (+)
CBA/J	ENSMUSG00210010283	lncRNA gene	Chr14:69910309-69932898 (+)
DBA/2J	ENSMUSG00185009215	lncRNA gene	Chr14:75078338-75100915 (+)
FVB/NJ	ENSMUSG00205026563	lncRNA gene	Chr14:69320200-69342801 (+)
JF1/MsJ	ENSUMUG00000020016	lncRNA gene	Chr14:86235855-86257568 (+)
LP/J	ENSMUSG00230002902	lncRNA gene	Chr14:87119231-87141828 (+)
NOD/ShiLtJ	ENSMUSG00190010934	lncRNA gene	Chr14:69740094-69762684 (+)
NZO/HlLtJ	ENSMUSG00225025385	lncRNA gene	Chr14:77377342-77399964 (+)
PWK/PhJ	ENSLUMG00010011318	lncRNA gene	Chr14:69092218-69114799 (+)
SPRET/EiJ	ENSMSPG00010000227	lncRNA gene	Chr14:72725342-72754902 (+)
WSB/EiJ	ENSIUOG00005024139	lncRNA gene	Chr14:69105913-69128540 (+)

Homology

• Gene Tree
  Gm49046
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28

• Ensembl
  ENSMUSG00000115542 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000115542	Ensembl Gene Model | MGI Sequence Detail	22642	C57BL/6J
transcript	ENSMUST00000274409	Ensembl | MGI Sequence Detail	823	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;