Gm49040 Pseudogene Detail

Summary

• Symbol
  Gm49040
• Name
  predicted gene, 49040

• Feature Type
  pseudogene
• IDs
  MGI:6118413
  NCBI Gene: 112840928
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr14:35702951-35703225 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  123 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6118413	pseudogene	Chr14:35702950-35703627 (+)
129S1/SvImJ	ENSMUSG00200038033	pseudogene	Chr14:27527594-27527869 (+)
A/J	ENSMUSG00195014345	pseudogene	Chr14:28604537-28604811 (+)
AKR/J	ENSMUSG00220036000	pseudogene	Chr14:27729852-27730126 (+)
BALB/cJ	ENSMUSG00180029317	pseudogene	Chr14:27693009-27693283 (+)
C3H/HeJ	ENSMUSG00175042967	pseudogene	Chr14:27764345-27764619 (+)
C57BL/6NJ	ENSMUSG00215037002	pseudogene	Chr14:28004116-28004390 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005025439	pseudogene	Chr14:27805045-27805319 (+)
CBA/J	ENSMUSG00210044589	pseudogene	Chr14:28010875-28011149 (+)
DBA/2J	ENSMUSG00185016189	pseudogene	Chr14:32245408-32245682 (+)
FVB/NJ	ENSMUSG00205038793	pseudogene	Chr14:27865852-27866126 (+)
JF1/MsJ	ENSUMUG00000049629	pseudogene	Chr14:39518347-39518622 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190019464	pseudogene	Chr14:28011929-28012203 (+)
NZO/HlLtJ	ENSMUSG00225042094	pseudogene	Chr14:33891472-33891746 (+)
PWK/PhJ	ENSLUMG00010022981	pseudogene	Chr14:16083195-16083470 (+)
SPRET/EiJ	ENSMSPG00010044312	pseudogene	Chr14:29705464-29705739 (+)
WSB/EiJ	ENSIUOG00005012688	pseudogene	Chr14:27838310-27838584 (+)

Homology

• Gene Tree
  Gm49040
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000115274 (Evidence)
• NCBI Gene
  112840928

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000115274	Ensembl Gene Model | MGI Sequence Detail	275	C57BL/6J
transcript	ENSMUST00000228746	Ensembl | MGI Sequence Detail	275	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;