Gm49018 Gene Detail

Summary

• Symbol
  Gm49018
• Name
  predicted gene, 49018

• Feature Type
  lncRNA gene
• IDs
  MGI:6118380
  NCBI Gene: 118568132
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr14:99125565-99158321 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  908 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6118380	lncRNA gene	Chr14:99096155-99158403 (-)
129S1/SvImJ	ENSMUSG00200019585	lncRNA gene	Chr14:87655310-87688277 (-)
A/J	ENSMUSG00195019934	lncRNA gene	Chr14:87829041-87862018 (-)
AKR/J	ENSMUSG00220002263	lncRNA gene	Chr14:87237924-87271428 (-)
BALB/cJ	ENSMUSG00180004705	lncRNA gene	Chr14:87312027-87344999 (-)
C3H/HeJ	ENSMUSG00175002769	lncRNA gene	Chr14:89178262-89211235 (-)
C57BL/6NJ	ENSMUSG00215020784	lncRNA gene	Chr14:87361835-87394811 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005016344	lncRNA gene	Chr14:88802729-88835856 (-)
CBA/J	ENSMUSG00210007823	lncRNA gene	Chr14:87871679-87905176 (-)
DBA/2J	ENSMUSG00185011400	lncRNA gene	Chr14:93055770-93089267 (-)
FVB/NJ	ENSMUSG00205014210	lncRNA gene	Chr14:86969671-87002638 (-)
JF1/MsJ	ENSUMUG00000012781	lncRNA gene	Chr14:104022922-104055901 (-)
LP/J	ENSMUSG00230003910	lncRNA gene	Chr14:104896093-104929060 (-)
NOD/ShiLtJ	ENSMUSG00190009792	lncRNA gene	Chr14:87651003-87683974 (-)
NZO/HlLtJ	ENSMUSG00225025489	lncRNA gene	Chr14:95304549-95337530 (-)
PWK/PhJ	ENSLUMG00010004785	lncRNA gene	Chr14:86912821-86946306 (-)
SPRET/EiJ	ENSMSPG00010009506	lncRNA gene	Chr14:90810966-90844772 (-)
WSB/EiJ	ENSIUOG00005018333	lncRNA gene	Chr14:86844881-86878386 (-)

Homology

• Gene Tree
  Gm49018
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  44
• RefSeq
  1

• Ensembl
  ENSMUSG00000115242 (Evidence)
• NCBI Gene
  118568132

Representative Sequences			Length	Strain/Species
genomic	118568132	NCBI Gene Model | MGI Sequence Detail	32757	C57BL/6J
transcript	XR_004938578	RefSeq | MGI Sequence Detail	463	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm49018:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr129998	Chr14:99158333-99158336 (-)	-14 bp