Gm49015 Gene Detail

Summary

• Symbol
  Gm49015
• Name
  predicted gene, 49015

• Feature Type
  lncRNA gene
• IDs
  MGI:6118375
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr14:79383699-79388829 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  89 from dbSNP Build 142
• Strain Annotations
  34

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6118375	lncRNA gene	Chr14:79383699-79388829 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	ENSMUSG00215008981	lncRNA gene	Chr15:15999955-16005085 (+)
C57BL/6NJ	ENSMUSG00215052182	lncRNA gene	Chr15:97496319-97501410 (-)
C57BL/6NJ	ENSMUSG00215010291	lncRNA gene	Chr17:56888112-56893243 (-)
C57BL/6NJ	ENSMUSG00215025042	lncRNA gene	Chr2:139587373-139592503 (+)
C57BL/6NJ	ENSMUSG00215040385	lncRNA gene	Chr3:94510718-94515809 (+)
C57BL/6NJ	ENSMUSG00215038460	lncRNA gene	Chr6:82870630-82875760 (-)
C57BL/6NJ	ENSMUSG00215015682	lncRNA gene	Chr1:14176437-14181528 (+)
C57BL/6NJ	ENSMUSG00215039265	lncRNA gene	Chr7:115041871-115047001 (-)
C57BL/6NJ	ENSMUSG00215025212	lncRNA gene	Chr14:67550506-67555636 (-)
C57BL/6NJ	ENSMUSG00215021754	lncRNA gene	Chr14:89555547-89560677 (-)
C57BL/6NJ	ENSMUSG00215022350	lncRNA gene	Chr12:48995927-49001046 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000021311	lncRNA gene	Chr14:84285003-84290279 (-)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190034501	lncRNA gene	Chr1:14103516-14108607 (+)
NOD/ShiLtJ	ENSMUSG00190053667	lncRNA gene	Chr7:19477483-19482574 (-)
NOD/ShiLtJ	ENSMUSG00190021114	lncRNA gene	Chr7:115673129-115678259 (-)
NOD/ShiLtJ	ENSMUSG00190013948	lncRNA gene	Chr1:143802650-143807780 (+)
NOD/ShiLtJ	ENSMUSG00190013763	lncRNA gene	Chr13:34288686-34293816 (-)
NOD/ShiLtJ	ENSMUSG00190011113	lncRNA gene	Chr14:67796822-67801952 (-)
NOD/ShiLtJ	ENSMUSG00190002235	lncRNA gene	Chr15:16018454-16023584 (+)
NOD/ShiLtJ	ENSMUSG00190011868	lncRNA gene	Chr17:57021823-57026954 (-)
NOD/ShiLtJ	ENSMUSG00190035797	lncRNA gene	Chr2:139668833-139673963 (+)
NOD/ShiLtJ	ENSMUSG00190047602	lncRNA gene	Chr6:82304843-82309973 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005008062	lncRNA gene	Chr9:3664688-3669781 (-)
WSB/EiJ	ENSIUOG00005035017	lncRNA gene	Chr7:116373229-116378359 (-)
WSB/EiJ	ENSIUOG00005024358	lncRNA gene	Chr14:67144771-67149901 (-)
WSB/EiJ	ENSIUOG00005027485	lncRNA gene	Chr2:165330040-165335171 (-)
WSB/EiJ	ENSIUOG00005036201	lncRNA gene	Chr6:83210105-83215235 (-)
WSB/EiJ	ENSIUOG00005002971	lncRNA gene	Chr6:93624933-93630063 (-)
WSB/EiJ	ENSIUOG00005038981	lncRNA gene	Chr7:129148857-129153987 (+)
WSB/EiJ	ENSIUOG00005013819	lncRNA gene	Chr11:26910120-26915250 (-)
WSB/EiJ	ENSIUOG00005002158	lncRNA gene	Chr11:35788337-35794919 (-)
WSB/EiJ	ENSIUOG00005013286	lncRNA gene	Chr12:69091323-69096454 (-)
WSB/EiJ	ENSIUOG00005030963	lncRNA gene	Chr13:33204037-33209167 (-)

Homology

• Gene Tree
  Gm49015
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  36

• Ensembl
  ENSMUSG00000115167 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000115167	Ensembl Gene Model | MGI Sequence Detail	5131	C57BL/6J
transcript	ENSMUST00000226853	Ensembl | MGI Sequence Detail	2704	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm49015:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr129886	Chr14:79389233-79389257 (-)	-416 bp
Tssr129885	Chr14:79389222-79389230 (-)	-397 bp