Gm49012 Gene Detail

Summary

• Symbol
  Gm49012
• Name
  predicted gene, 49012

• Feature Type
  lncRNA gene
• IDs
  MGI:6118370
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr14:34291359-34327659 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1188 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6118370	lncRNA gene	Chr14:34291359-34327659 (+)
129S1/SvImJ	ENSMUSG00200038279	lncRNA gene	Chr14:26158693-26173288 (+)
A/J	ENSMUSG00195014006	lncRNA gene	Chr14:27214026-27228635 (+)
AKR/J	ENSMUSG00220035576	lncRNA gene	Chr14:26332792-26347401 (+)
BALB/cJ	ENSMUSG00180030469	lncRNA gene	Chr14:26302502-26317112 (+)
C3H/HeJ	ENSMUSG00175042003	lncRNA gene	Chr14:26369585-26384193 (+)
C57BL/6NJ	ENSMUSG00215035348	lncRNA gene	Chr14:26606316-26620924 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005024385	lncRNA gene	Chr14:26444349-26458948 (+)
CBA/J	ENSMUSG00210044263	lncRNA gene	Chr14:26616732-26631340 (+)
DBA/2J	ENSMUSG00185014626	lncRNA gene	Chr14:30878502-30892245 (+)
FVB/NJ	ENSMUSG00205039211	lncRNA gene	Chr14:26474323-26488931 (+)
JF1/MsJ	ENSUMUG00000049167	lncRNA gene	Chr14:38149082-38163676 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190020487	lncRNA gene	Chr14:26621231-26635839 (+)
NZO/HlLtJ	ENSMUSG00225042045	lncRNA gene	Chr14:32501093-32515701 (+)
PWK/PhJ	ENSLUMG00010023240	lncRNA gene	Chr14:14735433-14750045 (+)
SPRET/EiJ	ENSMSPG00010043799	lncRNA gene	Chr14:28305311-28320317 (+)
WSB/EiJ	ENSIUOG00005012812	lncRNA gene	Chr14:26445553-26460191 (+)

Homology

• Gene Tree
  Gm49012
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000115509 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000115509	Ensembl Gene Model | MGI Sequence Detail	36301	C57BL/6J
transcript	ENSMUST00000342164	Ensembl | MGI Sequence Detail	1785	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;