Gm49011 Pseudogene Detail

Summary

• Symbol
  Gm49011
• Name
  predicted gene, 49011

• Feature Type
  pseudogene
• IDs
  MGI:6118369
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr14:79343149-79343319 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  123 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6118369	pseudogene	Chr14:79343149-79343319 (+)
129S1/SvImJ	ENSMUSG00200010923	pseudogene	Chr14:67793194-67793364 (+)
A/J	ENSMUSG00195004330	pseudogene	Chr14:67921886-67922056 (+)
AKR/J	ENSMUSG00220007484	pseudogene	Chr14:67298147-67298317 (+)
BALB/cJ	ENSMUSG00180024446	pseudogene	Chr14:67513563-67513733 (+)
C3H/HeJ	ENSMUSG00175031603	pseudogene	Chr14:69323600-69323770 (+)
C57BL/6NJ	ENSMUSG00215025407	pseudogene	Chr14:67509950-67510120 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005032853	pseudogene	Chr14:69188662-69188663 (+)
CBA/J	ENSMUSG00210010356	pseudogene	Chr14:67934267-67934437 (+)
DBA/2J	ENSMUSG00185009348	pseudogene	Chr14:73092386-73092556 (+)
FVB/NJ	ENSMUSG00205027008	pseudogene	Chr14:67342575-67342745 (+)
JF1/MsJ	ENSUMUG00000021350	pseudogene	Chr14:84244723-84244893 (+)
LP/J	ENSMUSG00230002881	pseudogene	Chr14:85130520-85130690 (+)
NOD/ShiLtJ	ENSMUSG00190011132	pseudogene	Chr14:67756271-67756441 (+)
NZO/HlLtJ	ENSMUSG00225025356	pseudogene	Chr14:75411118-75411288 (+)
PWK/PhJ	ENSLUMG00010011131	pseudogene	Chr14:67110756-67110926 (+)
SPRET/EiJ	ENSMSPG00010028653	pseudogene	Chr14:70794910-70794911 (+)
WSB/EiJ	ENSIUOG00005024420	pseudogene	Chr14:67104892-67104893 (+)

Homology

• Gene Tree
  Gm49011
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000115643 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000115643	Ensembl Gene Model | MGI Sequence Detail	171	C57BL/6J
transcript	ENSMUST00000227294	Ensembl | MGI Sequence Detail	171	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;