Gm49003 Gene Detail

Summary

• Symbol
  Gm49003
• Name
  predicted gene, 49003

• Feature Type
  lncRNA gene
• IDs
  MGI:6118356
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr14:77815984-77871300 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1680 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6118356	lncRNA gene	Chr14:77815984-77871300 (-)
129S1/SvImJ	ENSMUSG00200011049	lncRNA gene	Chr14:66254266-66308596 (-)
A/J	ENSMUSG00195004300	lncRNA gene	Chr14:66397478-66455028 (-)
AKR/J	ENSMUSG00220007482	lncRNA gene	Chr14:65778790-65833137 (-)
BALB/cJ	ENSMUSG00180023005	lncRNA gene	Chr14:65989297-66046837 (-)
C3H/HeJ	ENSMUSG00175030870	lncRNA gene	Chr14:67798243-67852591 (-)
C57BL/6NJ	ENSMUSG00215022066	lncRNA gene	Chr14:65981081-66036401 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005032150	lncRNA gene	Chr14:67643246-67699235 (-)
CBA/J	ENSMUSG00210010335	lncRNA gene	Chr14:66415091-66469431 (-)
DBA/2J	ENSMUSG00185009148	lncRNA gene	Chr14:71557138-71611486 (-)
FVB/NJ	ENSMUSG00205028238	lncRNA gene	Chr14:65812699-65868022 (-)
JF1/MsJ	ENSUMUG00000018790	lncRNA gene	Chr14:82714831-82772380 (-)
LP/J	ENSMUSG00230018074	lncRNA gene	Chr14:83591171-83645499 (-)
NOD/ShiLtJ	ENSMUSG00190011013	lncRNA gene	Chr14:66227349-66282660 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010011474	lncRNA gene	Chr14:65591719-65646070 (-)
SPRET/EiJ	ENSMSPG00010029900	lncRNA gene	Chr14:69246365-69301698 (-)
WSB/EiJ	ENSIUOG00005024346	lncRNA gene	Chr14:65571034-65625483 (-)

Homology

• Gene Tree
  Gm49003
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  4
• Gene trapped
  4
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000115363 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000115363	Ensembl Gene Model | MGI Sequence Detail	55317	C57BL/6J
transcript	ENSMUST00000227098	Ensembl | MGI Sequence Detail	349	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;