Gm48901 Gene Detail

Summary

• Symbol
  Gm48901
• Name
  predicted gene, 48901

• Feature Type
  lncRNA gene
• IDs
  MGI:6098669
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr9:27464760-27466467 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  165 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6098669	lncRNA gene	Chr9:27464760-27466467 (+)
129S1/SvImJ	ENSMUSG00200008731	lncRNA gene	Chr9:24455325-24456804 (+)
A/J	ENSMUSG00195006585	lncRNA gene	Chr9:24261436-24262915 (+)
AKR/J	ENSMUSG00220010934	lncRNA gene	Chr9:24262488-24263965 (+)
BALB/cJ	ENSMUSG00180007047	lncRNA gene	Chr9:24395564-24397045 (+)
C3H/HeJ	ENSMUSG00175019902	lncRNA gene	Chr9:24371987-24373466 (+)
C57BL/6NJ	ENSMUSG00215009233	lncRNA gene	Chr9:24357401-24358880 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005019362	lncRNA gene	Chr9:24345388-24346443 (+)
CBA/J	ENSMUSG00210022241	lncRNA gene	Chr9:24415571-24417054 (+)
DBA/2J	ENSMUSG00185002937	lncRNA gene	Chr9:24454037-24455516 (+)
FVB/NJ	ENSMUSG00205004742	lncRNA gene	Chr9:24744094-24745559 (+)
JF1/MsJ	ENSUMUG00000016590	lncRNA gene	Chr9:24590285-24591808 (+)
LP/J	ENSMUSG00230005419	lncRNA gene	Chr9:24861284-24862761 (+)
NOD/ShiLtJ	ENSMUSG00190006784	lncRNA gene	Chr9:24447498-24448975 (+)
NZO/HlLtJ	ENSMUSG00225015092	lncRNA gene	Chr9:24874344-24875806 (+)
PWK/PhJ	ENSLUMG00010009755	lncRNA gene	Chr9:24473887-24475395 (+)
SPRET/EiJ	ENSMSPG00010002179	lncRNA gene	Chr9:24804033-24805402 (+)
WSB/EiJ	ENSIUOG00005016419	lncRNA gene	Chr9:23937907-23939382 (+)

Homology

• Gene Tree
  Gm48901
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000111694 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000111694	Ensembl Gene Model | MGI Sequence Detail	1708	C57BL/6J
transcript	ENSMUST00000214666	Ensembl | MGI Sequence Detail	604	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;