Gm48893 Gene Detail

Summary

• Symbol
  Gm48893
• Name
  predicted gene, 48893

• Feature Type
  lncRNA gene
• IDs
  MGI:6098656
  NCBI Gene: 115487387
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:26571296-26618994 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1533 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6098656	lncRNA gene	Chr10:26571296-26624278 (+)
129S1/SvImJ	ENSMUSG00200010467	lncRNA gene	Chr10:23390453-23438036 (+)
A/J	ENSMUSG00195015743	lncRNA gene	Chr10:23692829-23740406 (+)
AKR/J	ENSMUSG00220011951	lncRNA gene	Chr10:23373192-23420767 (+)
BALB/cJ	ENSMUSG00180020069	lncRNA gene	Chr10:23821616-23869194 (+)
C3H/HeJ	ENSMUSG00175026605	lncRNA gene	Chr10:23489789-23537366 (+)
C57BL/6NJ	ENSMUSG00215016093	lncRNA gene	Chr10:23362987-23410547 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005014875	lncRNA gene	Chr10:23164849-23215187 (+)
CBA/J	ENSMUSG00210023638	lncRNA gene	Chr10:23477679-23525235 (+)
DBA/2J	ENSMUSG00185007614	lncRNA gene	Chr10:23649758-23697316 (+)
FVB/NJ	ENSMUSG00205010691	lncRNA gene	Chr10:23628297-23675873 (+)
JF1/MsJ	ENSUMUG00000019495	lncRNA gene	Chr10:23421694-23465382 (+)
LP/J	ENSMUSG00230012675	lncRNA gene	Chr10:25424891-25472467 (+)
NOD/ShiLtJ	ENSMUSG00190015584	lncRNA gene	Chr10:23780114-23827693 (+)
NZO/HlLtJ	ENSMUSG00225031489	lncRNA gene	Chr10:29683762-29731337 (+)
PWK/PhJ	ENSLUMG00010010818	lncRNA gene	Chr10:23313849-23361503 (+)
SPRET/EiJ	ENSMSPG00010015778	lncRNA gene	Chr10:24109041-24150474 (+)
WSB/EiJ	ENSIUOG00005031575	lncRNA gene	Chr10:23059345-23113869 (+)

Homology

• Gene Tree
  Gm48893
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  2

• Ensembl
  ENSMUSG00000111950 (Evidence)
• NCBI Gene
  115487387

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000111950	Ensembl Gene Model | MGI Sequence Detail	47699	C57BL/6J
transcript	ENSMUST00000282147	Ensembl | MGI Sequence Detail	1100	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm48893:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr92790	Chr10:26571288-26571324 (+)	10 bp