Gm48882 Gene Detail

Summary

• Symbol
  Gm48882
• Name
  predicted gene, 48882

• Feature Type
  lncRNA gene
• IDs
  MGI:6098637
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr10:95154109-95160634 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  256 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6098637	lncRNA gene	Chr10:95154109-95160634 (+)
129S1/SvImJ	ENSMUSG00200030186	lncRNA gene	Chr10:91669640-91675751 (+)
A/J	ENSMUSG00195015962	lncRNA gene	Chr10:92095719-92101831 (+)
AKR/J	ENSMUSG00220023206	lncRNA gene	Chr10:91657441-91663552 (+)
BALB/cJ	ENSMUSG00180032862	lncRNA gene	Chr10:92098304-92104416 (+)
C3H/HeJ	ENSMUSG00175023433	lncRNA gene	Chr10:92004205-92010316 (+)
C57BL/6NJ	ENSMUSG00215029896	lncRNA gene	Chr10:91685338-91691449 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005035535	lncRNA gene	Chr10:91377675-91383845 (+)
CBA/J	ENSMUSG00210038237	lncRNA gene	Chr10:91834051-91840162 (+)
DBA/2J	ENSMUSG00185043378	lncRNA gene	Chr10:92046029-92052140 (+)
FVB/NJ	ENSMUSG00205020035	lncRNA gene	Chr10:91744363-91750475 (+)
JF1/MsJ	ENSUMUG00000027726	lncRNA gene	Chr10:93470038-93476167 (+)
LP/J	ENSMUSG00230022341	lncRNA gene	Chr10:93958316-93964427 (+)
NOD/ShiLtJ	ENSMUSG00190019561	lncRNA gene	Chr10:92083252-92089363 (+)
NZO/HlLtJ	ENSMUSG00225022111	lncRNA gene	Chr10:98200595-98206708 (+)
PWK/PhJ	ENSLUMG00010023938	lncRNA gene	Chr10:91728786-91734915 (+)
SPRET/EiJ	ENSMSPG00010010814	lncRNA gene	Chr10:93373071-93379237 (+)
WSB/EiJ	ENSIUOG00005038423	lncRNA gene	Chr10:91781753-91787866 (+)

Homology

• Gene Tree
  Gm48882
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  7
• Gene trapped
  7
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24

• Ensembl
  ENSMUSG00000112593 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000112593	Ensembl Gene Model | MGI Sequence Detail	6526	C57BL/6J
transcript	ENSMUST00000218132	Ensembl | MGI Sequence Detail	1470	Not Applicable

References

• Summaries
  All 3

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm48882:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr95353	Chr10:95154319-95154329 (+)	215 bp
Tssr95354	Chr10:95155132-95155145 (+)	1,030 bp
Tssr95355	Chr10:95155153-95155163 (+)	1,049 bp