Gm48877 Gene Detail

Summary

• Symbol
  Gm48877
• Name
  predicted gene, 48877

• Feature Type
  lncRNA gene
• IDs
  MGI:6098628
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:122241018-122382403 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  4591 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6098628	lncRNA gene	Chr10:122241018-122382403 (-)
129S1/SvImJ	ENSMUSG00200027885	lncRNA gene	Chr10:118584364-118725810 (-)
A/J	ENSMUSG00195023114	lncRNA gene	Chr10:119024418-119165150 (-)
AKR/J	ENSMUSG00220014995	lncRNA gene	Chr10:118652382-118793786 (-)
BALB/cJ	ENSMUSG00180019095	lncRNA gene	Chr10:119015546-119156280 (-)
C3H/HeJ	ENSMUSG00175025506	lncRNA gene	Chr10:119025785-119167169 (-)
C57BL/6NJ	ENSMUSG00215019251	lncRNA gene	Chr10:118654104-118795508 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005035095	lncRNA gene	Chr10:117981099-118122288 (-)
CBA/J	ENSMUSG00210021456	lncRNA gene	Chr10:118861410-119002797 (-)
DBA/2J	ENSMUSG00185009177	lncRNA gene	Chr10:118971212-119112593 (-)
FVB/NJ	ENSMUSG00205028304	lncRNA gene	Chr10:118285169-118426552 (-)
JF1/MsJ	ENSUMUG00000023126	lncRNA gene	Chr10:120271444-120412820 (-)
LP/J	ENSMUSG00230025993	lncRNA gene	Chr10:120911974-121053402 (-)
NOD/ShiLtJ	ENSMUSG00190018747	lncRNA gene	Chr10:119069212-119210612 (-)
NZO/HlLtJ	ENSMUSG00225037996	lncRNA gene	Chr10:125156871-125291200 (-)
PWK/PhJ	ENSLUMG00010013892	lncRNA gene	Chr10:118673713-118825394 (-)
SPRET/EiJ	ENSMSPG00010017223	lncRNA gene	Chr10:120583027-120732002 (-)
WSB/EiJ	ENSIUOG00005014663	lncRNA gene	Chr10:118674542-118816093 (-)

Homology

• Gene Tree
  Gm48877
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000112873 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000112873	Ensembl Gene Model | MGI Sequence Detail	141386	C57BL/6J
transcript	ENSMUST00000218285	Ensembl | MGI Sequence Detail	548	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;