Gm48860 Gene Detail

Summary

• Symbol
  Gm48860
• Name
  predicted gene, 48860

• Feature Type
  lncRNA gene
• IDs
  MGI:6098601
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr14:8122499-8141759 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  519 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6098601	lncRNA gene	Chr14:8122499-8141759 (+)
129S1/SvImJ	ENSMUSG00200025386	lncRNA gene	Chr14:4748700-4760799 (+)
A/J	ENSMUSG00195031283	lncRNA gene	Chr14:5584052-5603323 (+)
AKR/J	ENSMUSG00220023973	lncRNA gene	Chr14:4744196-4763465 (+)
BALB/cJ	ENSMUSG00180025030	lncRNA gene	Chr14:4907725-4926943 (+)
C3H/HeJ	ENSMUSG00175009573	lncRNA gene	Chr14:4892870-4904968 (+)
C57BL/6NJ	ENSMUSG00215019463	lncRNA gene	Chr14:5165480-5184741 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005031588	lncRNA gene	Chr14:4840492-4852644 (+)
CBA/J	ENSMUSG00210037640	lncRNA gene	Chr14:5115164-5127262 (+)
DBA/2J	ENSMUSG00185037697	lncRNA gene	Chr14:5121013-5133112 (+)
FVB/NJ	ENSMUSG00205026474	lncRNA gene	Chr14:5127726-5146994 (+)
JF1/MsJ	ENSUMUG00000025584	lncRNA gene	Chr14:5129638-5141725 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190035447	lncRNA gene	Chr14:5157558-5176824 (+)
NZO/HlLtJ	ENSMUSG00225037354	lncRNA gene	Chr14:5557010-5576270 (+)
PWK/PhJ	ENSLUMG00010032994	lncRNA gene	Chr14:26460935-26473000 (+)
SPRET/EiJ	ENSMSPG00010002754	lncRNA gene	Chr14:5378771-5391657 (+)
WSB/EiJ	ENSIUOG00005024797	lncRNA gene	Chr14:4984630-5003862 (+)

Homology

• Gene Tree
  Gm48860
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000114883 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000114883	Ensembl Gene Model | MGI Sequence Detail	19261	C57BL/6J
transcript	ENSMUST00000224991	Ensembl | MGI Sequence Detail	1104	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;