Gm48855 Gene Detail

Summary

• Symbol
  Gm48855
• Name
  predicted gene, 48855

• Feature Type
  lncRNA gene
• IDs
  MGI:6098594
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr9:64135621-64138077 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  157 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6098594	lncRNA gene	Chr9:64135621-64138077 (+)
129S1/SvImJ	ENSMUSG00200044622	lncRNA gene	Chr9:61238183-61240639 (+)
A/J	ENSMUSG00195026910	lncRNA gene	Chr9:60947807-60950264 (+)
AKR/J	ENSMUSG00220042241	lncRNA gene	Chr9:61098218-61100675 (+)
BALB/cJ	ENSMUSG00180017951	lncRNA gene	Chr9:61085871-61088327 (+)
C3H/HeJ	ENSMUSG00175013371	lncRNA gene	Chr9:61081572-61084029 (+)
C57BL/6NJ	ENSMUSG00215031777	lncRNA gene	Chr9:61072980-61075437 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005033319	lncRNA gene	Chr9:60994031-60996478 (+)
CBA/J	ENSMUSG00210014877	lncRNA gene	Chr9:61168060-61170513 (+)
DBA/2J	ENSMUSG00185034378	lncRNA gene	Chr9:61191273-61193726 (+)
FVB/NJ	ENSMUSG00205037432	lncRNA gene	Chr9:61518422-61520880 (+)
JF1/MsJ	ENSUMUG00000037975	lncRNA gene	Chr9:61255918-61258364 (+)
LP/J	ENSMUSG00230027335	lncRNA gene	Chr9:61437326-61439782 (+)
NOD/ShiLtJ	ENSMUSG00190022747	lncRNA gene	Chr9:61278187-61280643 (+)
NZO/HlLtJ	ENSMUSG00225046357	lncRNA gene	Chr9:61502605-61505062 (+)
PWK/PhJ	ENSLUMG00010027833	lncRNA gene	Chr9:61220777-61223227 (+)
SPRET/EiJ	ENSMSPG00010021346	lncRNA gene	Chr9:62280106-62282545 (+)
WSB/EiJ	ENSIUOG00005027011	lncRNA gene	Chr9:60684108-60686520 (+)

Homology

• Gene Tree
  Gm48855
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000111160 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000111160	Ensembl Gene Model | MGI Sequence Detail	2457	C57BL/6J
transcript	ENSMUST00000214497	Ensembl | MGI Sequence Detail	2457	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;