Gm48836 Pseudogene Detail

Summary

• Symbol
  Gm48836
• Name
  predicted gene, 48836

• Feature Type
  pseudogene
• IDs
  MGI:6098565
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:5041006-5041286 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  16 from dbSNP Build 142
• Strain Annotations
  51

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6098565	pseudogene	Chr10:5041006-5041286 (-)
129S1/SvImJ	ENSMUSG00200010690	pseudogene	Chr10:2020209-2020489 (-)
A/J	ENSMUSG00195010552	pseudogene	Chr10:1991395-1991675 (-)
AKR/J	ENSMUSG00220007802	pseudogene	Chr10:2036629-2036909 (-)
BALB/cJ	ENSMUSG00180024882	pseudogene	Chr10:2085525-2085805 (-)
C3H/HeJ	ENSMUSG00175013352	pseudogene	Chr10:2046230-2046510 (-)
C57BL/6NJ	ENSMUSG00215005408	pseudogene	Chr10:1977146-1977426 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005019063	pseudogene	Chr19:27959995-27960275 (-)
CAST/EiJ	ENSTCUG00005000719	pseudogene	Chr1:28303436-28303716 (+)
CAST/EiJ	ENSTCUG00005046655	pseudogene	Chr16:15673711-15673991 (+)
CAST/EiJ	ENSTCUG00005000728	pseudogene	Chr5:56151882-56152162 (-)
CAST/EiJ	ENSTCUG00005026796	pseudogene	Chr3:24888539-24888819 (-)
CAST/EiJ	ENSTCUG00005004642	pseudogene	Chr7:65853485-65853765 (+)
CAST/EiJ	ENSTCUG00005000716	pseudogene	Chr1:28236008-28236288 (-)
CAST/EiJ	ENSTCUG00005003862	pseudogene	Chr12:32561093-32561373 (-)
CAST/EiJ	ENSTCUG00005021672	pseudogene	ChrX:95654770-95655050 (-)
CAST/EiJ	ENSTCUG00005025423	pseudogene	Chr3:21236651-21236931 (+)
CAST/EiJ	ENSTCUG00005016636	pseudogene	Chr14:84601766-84602046 (-)
CAST/EiJ	ENSTCUG00005028184	pseudogene	Chr10:68056242-68056522 (+)
CBA/J	ENSMUSG00210012694	pseudogene	Chr10:1999209-1999489 (-)
DBA/2J	ENSMUSG00185010803	pseudogene	Chr10:2052656-2052936 (-)
FVB/NJ	ENSMUSG00205008980	pseudogene	Chr10:2036974-2037254 (-)
JF1/MsJ	ENSUMUG00000012235	pseudogene	Chr12:16312759-16313039 (-)
JF1/MsJ	ENSUMUG00000055546	pseudogene	Chr7:4572582-4572862 (-)
JF1/MsJ	ENSUMUG00000026001	pseudogene	Chr1:94795714-94795994 (-)
JF1/MsJ	ENSUMUG00000022255	pseudogene	Chr8:116260470-116260750 (-)
JF1/MsJ	ENSUMUG00000014577	pseudogene	Chr8:104200711-104200991 (-)
JF1/MsJ	ENSUMUG00000055792	pseudogene	Chr7:8665274-8665554 (+)
JF1/MsJ	ENSUMUG00000055576	pseudogene	Chr7:8608895-8609175 (+)
JF1/MsJ	ENSUMUG00000010091	pseudogene	Chr4:143607708-143607988 (-)
JF1/MsJ	ENSUMUG00000031735	pseudogene	Chr6:30707920-30708200 (-)
JF1/MsJ	ENSUMUG00000048586	pseudogene	Chr5:92736391-92736671 (+)
JF1/MsJ	ENSUMUG00000032713	pseudogene	Chr4:78481700-78481980 (+)
LP/J	ENSMUSG00230017099	pseudogene	Chr10:3684825-3685105 (-)
NOD/ShiLtJ	ENSMUSG00190027182	pseudogene	Chr10:1992647-1992927 (-)
NZO/HlLtJ	ENSMUSG00225013675	pseudogene	Chr10:8167946-8168226 (-)
PWK/PhJ	ENSLUMG00010004746	pseudogene	Chr14:86645821-86646101 (-)
PWK/PhJ	ENSLUMG00010047574	pseudogene	Chr17:32414529-32414809 (-)
PWK/PhJ	ENSLUMG00010035857	pseudogene	Chr2:72375745-72376025 (-)
PWK/PhJ	ENSLUMG00010027420	pseudogene	ChrX:41740346-41740626 (+)
PWK/PhJ	ENSLUMG00010025596	pseudogene	Chr13:57213351-57213631 (+)
PWK/PhJ	ENSLUMG00010025623	pseudogene	Chr13:57446904-57447184 (-)
PWK/PhJ	ENSLUMG00010020644	pseudogene	Chr6:19974063-19974343 (-)
PWK/PhJ	ENSLUMG00010045144	pseudogene	Chr14:40160875-40161155 (-)
PWK/PhJ	ENSLUMG00010023073	pseudogene	Chr9:47308453-47308733 (-)
PWK/PhJ	ENSLUMG00010041968	pseudogene	Chr2:135523325-135523605 (+)
PWK/PhJ	ENSLUMG00010002064	pseudogene	Chr3:153114569-153114849 (+)
PWK/PhJ	ENSLUMG00010013966	pseudogene	Chr8:53520264-53520544 (-)
SPRET/EiJ	ENSMSPG00010015824	pseudogene	Chr16:70942201-70942481 (+)
SPRET/EiJ	ENSMSPG00010025358	pseudogene	Chr6:68223895-68224175 (-)
WSB/EiJ	ENSIUOG00005014588	pseudogene	Chr10:2041626-2041906 (-)

Homology

• Gene Tree
  Gm48836
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  53

• Ensembl
  ENSMUSG00000111890 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000111890	Ensembl Gene Model | MGI Sequence Detail	281	C57BL/6J
transcript	ENSMUST00000220298	Ensembl | MGI Sequence Detail	281	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;