Gm48828 Pseudogene Detail

Summary

• Symbol
  Gm48828
• Name
  predicted gene, 48828

• Feature Type
  pseudogene
• IDs
  MGI:6098550
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:121910693-121910903 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  105 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6098550	pseudogene	Chr10:121910693-121910903 (+)
129S1/SvImJ	ENSMUSG00200026785	pseudogene	Chr10:118267131-118267341 (+)
A/J	ENSMUSG00195022733	pseudogene	Chr10:118677720-118677930 (+)
AKR/J	ENSMUSG00220015026	pseudogene	Chr10:118311656-118311866 (+)
BALB/cJ	ENSMUSG00180017213	pseudogene	Chr10:118690128-118690338 (+)
C3H/HeJ	ENSMUSG00175025842	pseudogene	Chr10:118685357-118685567 (+)
C57BL/6NJ	ENSMUSG00215022018	pseudogene	Chr10:118324210-118324420 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005033296	pseudogene	Chr10:117683159-117683369 (+)
CAST/EiJ	ENSTCUG00005035806	pseudogene	Chr10:117675338-117675542 (+)
CBA/J	ENSMUSG00210021827	pseudogene	Chr10:118524404-118524614 (+)
DBA/2J	ENSMUSG00185009613	pseudogene	Chr10:118640872-118641082 (+)
FVB/NJ	ENSMUSG00205026172	pseudogene	Chr10:117929515-117929725 (+)
JF1/MsJ	ENSUMUG00000025638	pseudogene	Chr10:119954864-119955066 (+)
LP/J	ENSMUSG00230026078	pseudogene	Chr10:120595162-120595372 (+)
NOD/ShiLtJ	ENSMUSG00190018491	pseudogene	Chr10:118731168-118731378 (+)
NZO/HlLtJ	ENSMUSG00225038137	pseudogene	Chr10:124848645-124848855 (+)
PWK/PhJ	ENSLUMG00010013388	pseudogene	Chr10:118379835-118380045 (+)
SPRET/EiJ	ENSMSPG00010016874	pseudogene	Chr10:120269224-120269432 (+)
WSB/EiJ	ENSIUOG00005013999	pseudogene	Chr10:118360522-118360732 (+)

Homology

• Gene Tree
  Gm48828
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000112815 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000112815	Ensembl Gene Model | MGI Sequence Detail	211	C57BL/6J
transcript	ENSMUST00000220024	Ensembl | MGI Sequence Detail	211	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;