Gm48795 Gene Detail

Summary

• Symbol
  Gm48795
• Name
  predicted gene, 48795

• Feature Type
  lncRNA gene
• IDs
  MGI:6098498
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:62961783-62963337 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  143 from dbSNP Build 142
• Strain Annotations
  31

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6098498	lncRNA gene	Chr13:62961783-62963337 (-)
129S1/SvImJ	ENSMUSG00200017461	lncRNA gene	Chr13:59083589-59085143 (-)
129S1/SvImJ	ENSMUSG00200006094	lncRNA gene	Chr9:83588656-83618648 (+)
A/J	ENSMUSG00195045430	lncRNA gene	Chr13:59238447-59240001 (-)
A/J	ENSMUSG00195007958	lncRNA gene	Chr9:83364102-83401024 (+)
AKR/J	ENSMUSG00220021067	lncRNA gene	Chr9:83497447-83527808 (+)
AKR/J	ENSMUSG00220045436	lncRNA gene	Chr13:58311734-58313288 (-)
BALB/cJ	ENSMUSG00180007750	lncRNA gene	Chr9:83469013-83505922 (+)
BALB/cJ	ENSMUSG00180018747	lncRNA gene	Chr13:59556595-59558149 (-)
C3H/HeJ	ENSMUSG00175044384	lncRNA gene	Chr13:59369655-59371209 (-)
C3H/HeJ	ENSMUSG00175005037	lncRNA gene	Chr9:83529054-83565533 (+)
C57BL/6NJ	ENSMUSG00215012862	lncRNA gene	Chr9:83471231-83500810 (+)
C57BL/6NJ	ENSMUSG00215040874	lncRNA gene	Chr13:59372076-59373630 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005042682	lncRNA gene	Chr13:59762399-59762679 (-)
CBA/J	ENSMUSG00210044395	lncRNA gene	Chr13:59569135-59570689 (-)
CBA/J	ENSMUSG00210006647	lncRNA gene	Chr9:83589894-83619472 (+)
DBA/2J	ENSMUSG00185002374	lncRNA gene	Chr9:83596263-83625901 (+)
DBA/2J	ENSMUSG00185008764	lncRNA gene	Chr13:60417754-60419308 (-)
FVB/NJ	ENSMUSG00205045657	lncRNA gene	Chr13:58543810-58545364 (-)
FVB/NJ	ENSMUSG00205005410	lncRNA gene	Chr9:83778067-83807726 (+)
JF1/MsJ	ENSUMUG00000037212	lncRNA gene	Chr13:60041831-60042615 (-)
LP/J	ENSMUSG00230036381	lncRNA gene	Chr13:69760129-69761295 (-)
LP/J	ENSMUSG00230010630	lncRNA gene	Chr9:83719526-83749516 (+)
NOD/ShiLtJ	ENSMUSG00190012126	lncRNA gene	Chr9:83667225-83697578 (+)
NOD/ShiLtJ	ENSMUSG00190039113	lncRNA gene	Chr13:59325142-59326696 (-)
NZO/HlLtJ	ENSMUSG00225047759	lncRNA gene	Chr13:63469020-63470574 (-)
NZO/HlLtJ	ENSMUSG00225017127	lncRNA gene	Chr9:83897174-83926821 (+)
PWK/PhJ	ENSLUMG00010024267	lncRNA gene	Chr13:58875363-58876147 (-)
SPRET/EiJ	ENSMSPG00010043633	lncRNA gene	Chr13:59097361-59097771 (-)
WSB/EiJ	ENSIUOG00005026809	lncRNA gene	Chr13:58053449-58054615 (-)
WSB/EiJ	ENSIUOG00005004025	lncRNA gene	Chr9:83064072-83093938 (+)

Homology

• Gene Tree
  Gm48795
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  33

• Ensembl
  ENSMUSG00000114117 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000114117	Ensembl Gene Model | MGI Sequence Detail	1555	C57BL/6J
transcript	ENSMUST00000221040	Ensembl | MGI Sequence Detail	1161	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;