Gm48759 Gene Detail

Summary

• Symbol
  Gm48759
• Name
  predicted gene, 48759

• Feature Type
  lncRNA gene
• IDs
  MGI:6098440
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:9472195-9475282 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  283 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6098440	lncRNA gene	Chr10:9472195-9475282 (+)
129S1/SvImJ	ENSMUSG00200010577	lncRNA gene	Chr10:6484000-6487223 (+)
A/J	ENSMUSG00195010092	lncRNA gene	Chr10:6370946-6374141 (+)
AKR/J	ENSMUSG00220007630	lncRNA gene	Chr10:6494099-6497294 (+)
BALB/cJ	ENSMUSG00180025661	lncRNA gene	Chr10:6532894-6536087 (+)
C3H/HeJ	ENSMUSG00175013667	lncRNA gene	Chr10:6523707-6526894 (+)
C57BL/6NJ	ENSMUSG00215005513	lncRNA gene	Chr10:6415607-6418560 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005018309	lncRNA gene	Chr10:6501097-6503723 (+)
CBA/J	ENSMUSG00210012645	lncRNA gene	Chr10:6469389-6472580 (+)
DBA/2J	ENSMUSG00185010609	lncRNA gene	Chr10:6517933-6521158 (+)
FVB/NJ	ENSMUSG00205009132	lncRNA gene	Chr10:6484367-6487399 (+)
JF1/MsJ	ENSUMUG00000039825	lncRNA gene	Chr10:6568129-6570790 (+)
LP/J	ENSMUSG00230018163	lncRNA gene	Chr10:8132731-8135926 (+)
NOD/ShiLtJ	ENSMUSG00190025359	lncRNA gene	Chr10:6475857-6478994 (+)
NZO/HlLtJ	ENSMUSG00225017338	lncRNA gene	Chr10:12666642-12669941 (+)
PWK/PhJ	ENSLUMG00010020857	lncRNA gene	Chr10:6301243-6303905 (+)
SPRET/EiJ	ENSMSPG00010006864	lncRNA gene	Chr10:6657645-6660303 (+)
WSB/EiJ	ENSIUOG00005013937	lncRNA gene	Chr10:6399150-6402551 (+)

Homology

• Gene Tree
  Gm48759
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000112303 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000112303	Ensembl Gene Model | MGI Sequence Detail	3088	C57BL/6J
transcript	ENSMUST00000217963	Ensembl | MGI Sequence Detail	1564	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;