Gm48746 Gene Detail

Summary

• Symbol
  Gm48746
• Name
  predicted gene, 48746

• Feature Type
  lncRNA gene
• IDs
  MGI:6098418
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:36089440-36105372 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  589 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6098418	lncRNA gene	Chr13:36089440-36105372 (+)
129S1/SvImJ	ENSMUSG00200012480	lncRNA gene	Chr13:33292286-33308220 (+)
A/J	ENSMUSG00195033235	lncRNA gene	Chr13:32378769-32394696 (+)
AKR/J	ENSMUSG00220031855	lncRNA gene	Chr13:32173589-32189517 (+)
BALB/cJ	ENSMUSG00180008179	lncRNA gene	Chr13:32684449-32700375 (+)
C3H/HeJ	ENSMUSG00175014437	lncRNA gene	Chr13:32631640-32647566 (+)
C57BL/6NJ	ENSMUSG00215012593	lncRNA gene	Chr13:32814139-32830076 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005038119	lncRNA gene	Chr13:32703387-32719959 (+)
CBA/J	ENSMUSG00210012190	lncRNA gene	Chr13:32644177-32660103 (+)
DBA/2J	ENSMUSG00185034496	lncRNA gene	Chr13:33461588-33477864 (+)
FVB/NJ	ENSMUSG00205039308	lncRNA gene	Chr13:32340786-32356723 (+)
JF1/MsJ	ENSUMUG00000033036	lncRNA gene	Chr13:33059228-33074766 (+)
LP/J	ENSMUSG00230016702	lncRNA gene	Chr13:42787967-42803893 (+)
NOD/ShiLtJ	ENSMUSG00190012801	lncRNA gene	Chr13:32865933-32881866 (+)
NZO/HlLtJ	ENSMUSG00225035129	lncRNA gene	Chr13:36598970-36614899 (+)
PWK/PhJ	ENSLUMG00010030484	lncRNA gene	Chr13:31891458-31907002 (+)
SPRET/EiJ	ENSMSPG00010010632	lncRNA gene	Chr13:31874444-31889603 (+)
WSB/EiJ	ENSIUOG00005028270	lncRNA gene	Chr13:32019035-32034964 (+)

Homology

• Gene Tree
  Gm48746
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000114270 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000114270	Ensembl Gene Model | MGI Sequence Detail	15933	C57BL/6J
transcript	ENSMUST00000225277	Ensembl | MGI Sequence Detail	1036	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;