Gm48697 Gene Detail

Summary

• Symbol
  Gm48697
• Name
  predicted gene, 48697

• Feature Type
  lncRNA gene
• IDs
  MGI:6098331
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:11700157-11717675 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  824 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6098331	lncRNA gene	Chr10:11700157-11717675 (-)
129S1/SvImJ	ENSMUSG00200011227	lncRNA gene	Chr10:8697689-8715186 (-)
A/J	ENSMUSG00195010027	lncRNA gene	Chr10:8604978-8622736 (-)
AKR/J	ENSMUSG00220007663	lncRNA gene	Chr10:8725973-8743730 (-)
BALB/cJ	ENSMUSG00180024046	lncRNA gene	Chr10:8766908-8784667 (-)
C3H/HeJ	ENSMUSG00175013202	lncRNA gene	Chr10:8757673-8775443 (-)
C57BL/6NJ	ENSMUSG00215005524	lncRNA gene	Chr10:8644582-8662098 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005018138	lncRNA gene	Chr10:8651151-8668451 (-)
CBA/J	ENSMUSG00210012665	lncRNA gene	Chr10:8703300-8721060 (-)
DBA/2J	ENSMUSG00185010994	lncRNA gene	Chr10:8731745-8749232 (-)
FVB/NJ	ENSMUSG00205009219	lncRNA gene	Chr10:8825842-8844592 (-)
JF1/MsJ	ENSUMUG00000036789	lncRNA gene	Chr10:8786587-8803947 (-)
LP/J	ENSMUSG00230019535	lncRNA gene	Chr10:10366190-10383944 (-)
NOD/ShiLtJ	ENSMUSG00190025659	lncRNA gene	Chr10:8736348-8754106 (-)
NZO/HlLtJ	ENSMUSG00225017052	lncRNA gene	Chr10:14880299-14897791 (-)
PWK/PhJ	ENSLUMG00010020732	lncRNA gene	Chr10:8542997-8560531 (-)
SPRET/EiJ	ENSMSPG00010007170	lncRNA gene	Chr10:8902013-8919616 (-)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm48697
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000111995 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000111995	Ensembl Gene Model | MGI Sequence Detail	17519	C57BL/6J
transcript	ENSMUST00000217771	Ensembl | MGI Sequence Detail	3607	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;