Gm48696 Gene Detail

Summary

• Symbol
  Gm48696
• Name
  predicted gene, 48696

• Feature Type
  lncRNA gene
• IDs
  MGI:6098329
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr19:3536090-3538014 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  106 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6098329	lncRNA gene	Chr19:3536090-3538014 (+)
129S1/SvImJ	ENSMUSG00200052488	lncRNA gene	Chr19:295737-297661 (+)
A/J	ENSMUSG00195053122	lncRNA gene	Chr19:686148-688063 (+)
AKR/J	ENSMUSG00220050269	lncRNA gene	Chr19:459168-461083 (+)
BALB/cJ	ENSMUSG00180052611	lncRNA gene	Chr19:1060753-1062666 (+)
C3H/HeJ	ENSMUSG00175014282	lncRNA gene	Chr19:305702-307616 (+)
C57BL/6NJ	ENSMUSG00215048227	lncRNA gene	Chr19:533985-535909 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005043514	lncRNA gene	Chr19:443346-445261 (+)
CBA/J	ENSMUSG00210050539	lncRNA gene	Chr19:306301-308205 (+)
DBA/2J	ENSMUSG00185053846	lncRNA gene	Chr19:682632-684536 (+)
FVB/NJ	ENSMUSG00205053378	lncRNA gene	Chr19:676188-678105 (+)
JF1/MsJ	ENSUMUG00000056724	lncRNA gene	Chr19:671265-673165 (+)
LP/J	ENSMUSG00230054229	lncRNA gene	Chr19:1601959-1603883 (+)
NOD/ShiLtJ	ENSMUSG00190053264	lncRNA gene	Chr19:227306-229220 (+)
NZO/HlLtJ	ENSMUSG00225027170	lncRNA gene	Chr19:5310818-5312742 (+)
PWK/PhJ	ENSLUMG00010008091	lncRNA gene	Chr19:438141-440037 (+)
SPRET/EiJ	ENSMSPG00010050665	lncRNA gene	Chr19:426042-427965 (+)
WSB/EiJ	ENSIUOG00005050950	lncRNA gene	Chr19:308343-310265 (+)

Homology

• Gene Tree
  Gm48696
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000114315 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000114315	Ensembl Gene Model | MGI Sequence Detail	1925	C57BL/6J
transcript	ENSMUST00000224419	Ensembl | MGI Sequence Detail	531	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;