Gm48678 Gene Detail

Summary

• Symbol
  Gm48678
• Name
  predicted gene, 48678

• Feature Type
  lncRNA gene
• IDs
  MGI:6098299
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:4645340-4705892 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1521 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6098299	lncRNA gene	Chr12:4645340-4705892 (-)
129S1/SvImJ	ENSMUSG00200025070	lncRNA gene	Chr12:1605328-1665880 (-)
A/J	ENSMUSG00195016182	lncRNA gene	Chr12:1633060-1693614 (-)
AKR/J	ENSMUSG00220033468	lncRNA gene	Chr12:1630600-1691151 (-)
BALB/cJ	ENSMUSG00180015403	lncRNA gene	Chr12:1629518-1690076 (-)
C3H/HeJ	ENSMUSG00175009993	lncRNA gene	Chr12:1614610-1675196 (-)
C57BL/6NJ	ENSMUSG00215023057	lncRNA gene	Chr12:1560148-1620699 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005023423	lncRNA gene	Chr12:1450732-1511897 (-)
CBA/J	ENSMUSG00210013634	lncRNA gene	Chr12:1634319-1694900 (-)
DBA/2J	ENSMUSG00185022137	lncRNA gene	Chr12:1612298-1672834 (-)
FVB/NJ	ENSMUSG00205003759	lncRNA gene	Chr12:1409986-1470535 (-)
JF1/MsJ	ENSUMUG00000035492	lncRNA gene	Chr12:1616637-1677165 (-)
LP/J	ENSMUSG00230012991	lncRNA gene	Chr12:3440370-3500909 (-)
NOD/ShiLtJ	ENSMUSG00190008146	lncRNA gene	Chr12:2852037-2912582 (-)
NZO/HlLtJ	ENSMUSG00225019663	lncRNA gene	Chr12:5500433-5560987 (-)
PWK/PhJ	ENSLUMG00010017412	lncRNA gene	Chr12:1436390-1496914 (-)
SPRET/EiJ	ENSMSPG00010005092	lncRNA gene	Chr12:1833478-1901796 (-)
WSB/EiJ	ENSIUOG00005002397	lncRNA gene	Chr12:1616603-1677196 (-)

Homology

• Gene Tree
  Gm48678
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  4
• Gene trapped
  4
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000111971 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000111971	Ensembl Gene Model | MGI Sequence Detail	60553	C57BL/6J
transcript	ENSMUST00000218352	Ensembl | MGI Sequence Detail	3347	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;