Gm48672 Pseudogene Detail

Summary

• Symbol
  Gm48672
• Name
  predicted gene, 48672

• Feature Type
  pseudogene
• IDs
  MGI:6098291
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:13591732-13592785 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  61 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6098291	pseudogene	Chr13:13591732-13592785 (+)
129S1/SvImJ	ENSMUSG00200014121	pseudogene	Chr13:10825321-10826375 (+)
A/J	ENSMUSG00195013061	pseudogene	Chr13:9873912-9874966 (+)
AKR/J	ENSMUSG00220013877	pseudogene	Chr13:9900610-9901362 (+)
AKR/J	ENSMUSG00220013538	pseudogene	Chr13:9532985-9533738 (+)
BALB/cJ	ENSMUSG00180036622	pseudogene	Chr13:10223001-10224054 (+)
C3H/HeJ	ENSMUSG00175035143	pseudogene	Chr13:10331970-10333023 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005026210	pseudogene	Chr13:9906865-9907605 (+)
CBA/J	no annotation
DBA/2J	ENSMUSG00185015028	pseudogene	Chr13:10892259-10893312 (+)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000011806	pseudogene	Chr13:9981451-9982203 (+)
LP/J	ENSMUSG00230036705	pseudogene	Chr13:20301308-20302361 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225032583	pseudogene	Chr13:14067578-14068632 (+)
PWK/PhJ	ENSLUMG00010017638	pseudogene	Chr13:9674256-9675014 (+)
SPRET/EiJ	ENSMSPG00010024566	pseudogene	Chr13:9361406-9362162 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm48672
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  16

• Ensembl
  ENSMUSG00000113444 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113444	Ensembl Gene Model | MGI Sequence Detail	1054	C57BL/6J
transcript	ENSMUST00000221774	Ensembl | MGI Sequence Detail	354	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;