Gm48670 Pseudogene Detail

Summary

• Symbol
  Gm48670
• Name
  predicted gene, 48670

• Feature Type
  pseudogene
• IDs
  MGI:6098288
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:42762888-42763461 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  182 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6098288	pseudogene	Chr10:42762888-42763461 (+)
129S1/SvImJ	ENSMUSG00200009435	pseudogene	Chr10:39649478-39650055 (+)
A/J	ENSMUSG00195017810	pseudogene	Chr10:39924808-39925381 (+)
AKR/J	ENSMUSG00220030231	pseudogene	Chr10:39614009-39614582 (+)
BALB/cJ	ENSMUSG00180017533	pseudogene	Chr10:40008938-40009511 (+)
C3H/HeJ	ENSMUSG00175012433	pseudogene	Chr10:39804009-39804582 (+)
C57BL/6NJ	ENSMUSG00215010477	pseudogene	Chr10:39553368-39553941 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005028382	pseudogene	Chr10:40002223-40002777 (+)
CBA/J	ENSMUSG00210025898	pseudogene	Chr10:39697545-39698118 (+)
DBA/2J	ENSMUSG00185007981	pseudogene	Chr10:39850115-39850688 (+)
FVB/NJ	ENSMUSG00205015301	pseudogene	Chr10:39765392-39765965 (+)
JF1/MsJ	ENSUMUG00000038175	pseudogene	Chr10:39651597-39652199 (+)
LP/J	ENSMUSG00230006044	pseudogene	Chr10:41639269-41639846 (+)
NOD/ShiLtJ	ENSMUSG00190032761	pseudogene	Chr10:39978194-39978767 (+)
NZO/HlLtJ	ENSMUSG00225019109	pseudogene	Chr10:45943066-45943639 (+)
PWK/PhJ	ENSLUMG00010008036	pseudogene	Chr10:39749442-39750038 (+)
SPRET/EiJ	ENSMSPG00010013762	pseudogene	Chr10:40787889-40788459 (+)
WSB/EiJ	ENSIUOG00005015742	pseudogene	Chr10:39522819-39523392 (+)

Homology

• Gene Tree
  Gm48670
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000111333 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000111333	Ensembl Gene Model | MGI Sequence Detail	574	C57BL/6J
transcript	ENSMUST00000217454	Ensembl | MGI Sequence Detail	574	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;