Gm48667 Pseudogene Detail

Summary

• Symbol
  Gm48667
• Name
  predicted gene, 48667

• Feature Type
  pseudogene
• IDs
  MGI:6098285
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr12:20246917-20247055 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  22 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6098285	pseudogene	Chr12:20246917-20247055 (+)
129S1/SvImJ	ENSMUSG00200023330	pseudogene	Chr12:15306322-15306460 (+)
A/J	no annotation
AKR/J	ENSMUSG00220031457	pseudogene	Chr12:16182021-16182159 (+)
BALB/cJ	ENSMUSG00180010534	pseudogene	Chr12:17657281-17657419 (+)
BALB/cJ	ENSMUSG00180010528	pseudogene	Chr12:16037097-16037235 (+)
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005006421	pseudogene	Chr12:15607755-15607893 (-)
CAST/EiJ	ENSTCUG00005006424	pseudogene	Chr12:14701096-14701234 (+)
CBA/J	ENSMUSG00210008174	pseudogene	Chr12:16264329-16264467 (-)
DBA/2J	ENSMUSG00185004192	pseudogene	Chr12:18052743-18052881 (-)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000010629	pseudogene	Chr12:17175684-17175822 (+)
LP/J	ENSMUSG00230008263	pseudogene	Chr12:21003947-21004085 (-)
LP/J	ENSMUSG00230007158	pseudogene	Chr12:25019380-25019518 (-)
NOD/ShiLtJ	ENSMUSG00190008335	pseudogene	Chr12:772021-772160 (-)
NZO/HlLtJ	ENSMUSG00225034833	pseudogene	Chr12:27202472-27202610 (-)
NZO/HlLtJ	ENSMUSG00225035626	pseudogene	Chr12:23206521-23206659 (-)
PWK/PhJ	no annotation
SPRET/EiJ	ENSMSPG00010003412	pseudogene	Chr12:17792896-17793034 (-)
WSB/EiJ	ENSIUOG00005001764	pseudogene	Chr12:15578838-15578976 (-)
WSB/EiJ	ENSIUOG00005001765	pseudogene	Chr12:15943470-15943608 (+)

Homology

• Gene Tree
  Gm48667
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000113964 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113964	Ensembl Gene Model | MGI Sequence Detail	139	C57BL/6J
transcript	ENSMUST00000220587	Ensembl | MGI Sequence Detail	139	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm48667:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr112920	Chr12:20246657-20246676 (+)	-250 bp