Gm48658 Pseudogene Detail

Summary

• Symbol
  Gm48658
• Name
  predicted gene, 48658

• Feature Type
  pseudogene
• IDs
  MGI:6098273
  NCBI Gene: 118567778
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:94488658-94488914 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  122 from dbSNP Build 142
• Strain Annotations
  35

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6098273	pseudogene	Chr10:94488622-94488914 (-)
129S1/SvImJ	ENSMUSG00200031406	pseudogene	Chr10:90998757-90999013 (-)
129S1/SvImJ	ENSMUSG00200032210	pseudogene	Chr10:91012828-91013081 (+)
A/J	ENSMUSG00195023752	pseudogene	Chr10:91443561-91443814 (+)
A/J	ENSMUSG00195023322	pseudogene	Chr10:91429487-91429743 (-)
AKR/J	ENSMUSG00220022418	pseudogene	Chr10:90991190-90991446 (-)
AKR/J	ENSMUSG00220023596	pseudogene	Chr10:91005258-91005511 (+)
BALB/cJ	ENSMUSG00180034594	pseudogene	Chr10:91432089-91432345 (-)
BALB/cJ	ENSMUSG00180036295	pseudogene	Chr10:91446158-91446411 (+)
C3H/HeJ	ENSMUSG00175024644	pseudogene	Chr10:91352125-91352378 (+)
C3H/HeJ	ENSMUSG00175023535	pseudogene	Chr10:91338060-91338316 (-)
C57BL/6NJ	ENSMUSG00215034768	pseudogene	Chr10:91033227-91033480 (+)
C57BL/6NJ	ENSMUSG00215030322	pseudogene	Chr10:91019156-91019412 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005037107	pseudogene	Chr10:90705382-90705637 (-)
CAST/EiJ	ENSTCUG00005038273	pseudogene	Chr10:90719467-90719722 (+)
CBA/J	ENSMUSG00210039198	pseudogene	Chr10:91181963-91182216 (+)
CBA/J	ENSMUSG00210034969	pseudogene	Chr10:91167899-91168155 (-)
DBA/2J	ENSMUSG00185045107	pseudogene	Chr10:91393950-91394203 (+)
DBA/2J	ENSMUSG00185044078	pseudogene	Chr10:91379876-91380132 (-)
FVB/NJ	ENSMUSG00205020174	pseudogene	Chr10:91078172-91078428 (-)
FVB/NJ	ENSMUSG00205024876	pseudogene	Chr10:91092243-91092496 (+)
JF1/MsJ	ENSUMUG00000028321	pseudogene	Chr10:92789084-92789340 (-)
JF1/MsJ	ENSUMUG00000034243	pseudogene	Chr10:92803293-92803544 (+)
LP/J	ENSMUSG00230022227	pseudogene	Chr10:93287486-93287742 (-)
LP/J	ENSMUSG00230023221	pseudogene	Chr10:93301559-93301812 (+)
NOD/ShiLtJ	ENSMUSG00190019384	pseudogene	Chr10:91417135-91417391 (-)
NOD/ShiLtJ	ENSMUSG00190020313	pseudogene	Chr10:91431196-91431449 (+)
NZO/HlLtJ	ENSMUSG00225022038	pseudogene	Chr10:97534593-97534849 (-)
NZO/HlLtJ	ENSMUSG00225022578	pseudogene	Chr10:97548644-97548897 (+)
PWK/PhJ	ENSLUMG00010025043	pseudogene	Chr10:91061715-91061966 (+)
PWK/PhJ	ENSLUMG00010023424	pseudogene	Chr10:91047571-91047827 (-)
SPRET/EiJ	ENSMSPG00010011071	pseudogene	Chr10:92689488-92689737 (+)
SPRET/EiJ	ENSMSPG00010010370	pseudogene	Chr10:92675155-92675418 (-)
WSB/EiJ	ENSIUOG00005040740	pseudogene	Chr10:91116959-91117215 (+)
WSB/EiJ	ENSIUOG00005038489	pseudogene	Chr10:91102882-91103138 (-)

Homology

• Gene Tree
  Gm48658
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  38

• Ensembl
  ENSMUSG00000112473 (Evidence)
• NCBI Gene
  118567778

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000112473	Ensembl Gene Model | MGI Sequence Detail	257	C57BL/6J
transcript	ENSMUST00000218051	Ensembl | MGI Sequence Detail	257	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;