Gm48654 Gene Detail

Summary

• Symbol
  Gm48654
• Name
  predicted gene, 48654

• Feature Type
  lncRNA gene
• IDs
  MGI:6098265
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:8589005-8592837 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  282 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6098265	lncRNA gene	Chr10:8589005-8592837 (+)
129S1/SvImJ	ENSMUSG00200010828	lncRNA gene	Chr10:5580587-5584410 (+)
A/J	ENSMUSG00195010166	lncRNA gene	Chr10:5469483-5473306 (+)
AKR/J	ENSMUSG00220007572	lncRNA gene	Chr10:5592642-5596463 (+)
BALB/cJ	ENSMUSG00180024994	lncRNA gene	Chr10:5631519-5635340 (+)
C3H/HeJ	ENSMUSG00175012777	lncRNA gene	Chr10:5629084-5632921 (+)
C57BL/6NJ	ENSMUSG00215005325	lncRNA gene	Chr10:5530333-5534167 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005018040	lncRNA gene	Chr10:5574872-5578694 (+)
CBA/J	ENSMUSG00210012696	lncRNA gene	Chr10:5574728-5578563 (+)
DBA/2J	ENSMUSG00185010324	lncRNA gene	Chr10:5621254-5625091 (+)
FVB/NJ	ENSMUSG00205008493	lncRNA gene	Chr10:5587634-5591475 (+)
JF1/MsJ	ENSUMUG00000037991	lncRNA gene	Chr10:5685529-5689334 (+)
LP/J	ENSMUSG00230018024	lncRNA gene	Chr10:7231432-7235253 (+)
NOD/ShiLtJ	ENSMUSG00190026209	lncRNA gene	Chr10:5584936-5588777 (+)
NZO/HlLtJ	ENSMUSG00225017407	lncRNA gene	Chr10:11768415-11772233 (+)
PWK/PhJ	ENSLUMG00010021275	lncRNA gene	Chr10:5414861-5418693 (+)
SPRET/EiJ	ENSMSPG00010006803	lncRNA gene	Chr10:5766792-5770586 (+)
WSB/EiJ	ENSIUOG00005013844	lncRNA gene	Chr10:5512122-5515956 (+)

Homology

• Gene Tree
  Gm48654
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000111215 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000111215	Ensembl Gene Model | MGI Sequence Detail	3833	C57BL/6J
transcript	ENSMUST00000213934	Ensembl | MGI Sequence Detail	850	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;