Gm48643 Pseudogene Detail

Summary

• Symbol
  Gm48643
• Name
  predicted gene, 48643

• Feature Type
  pseudogene
• IDs
  MGI:6098250
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:19915127-19915496 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  41 from dbSNP Build 142
• Strain Annotations
  25

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6098250	pseudogene	Chr12:19915127-19915496 (-)
129S1/SvImJ	ENSMUSG00200024579	pseudogene	Chr12:15209817-15210186 (+)
A/J	ENSMUSG00195020691	pseudogene	Chr12:17599261-17599629 (+)
AKR/J	ENSMUSG00220032086	pseudogene	Chr12:15801349-15801718 (-)
AKR/J	ENSMUSG00220029268	pseudogene	Chr12:16561588-16561956 (-)
BALB/cJ	ENSMUSG00180010504	pseudogene	Chr12:17525701-17526070 (-)
C3H/HeJ	ENSMUSG00175006181	pseudogene	Chr12:15017046-15017530 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005006566	pseudogene	Chr12:17691053-17691422 (-)
CBA/J	ENSMUSG00210008635	pseudogene	Chr12:16028743-16029111 (+)
DBA/2J	ENSMUSG00185004590	pseudogene	Chr12:18451254-18451622 (+)
DBA/2J	ENSMUSG00185004570	pseudogene	Chr12:17921417-17921787 (-)
DBA/2J	ENSMUSG00185004135	pseudogene	Chr12:17024629-17024997 (+)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000012713	pseudogene	Chr12:19845677-19847216 (-)
JF1/MsJ	ENSUMUG00000012298	pseudogene	Chr12:16928690-16929061 (+)
JF1/MsJ	ENSUMUG00000008943	pseudogene	Chr12:23590876-23591232 (-)
JF1/MsJ	ENSUMUG00000011501	pseudogene	Chr12:16816083-16816452 (-)
JF1/MsJ	ENSUMUG00000007951	pseudogene	Chr12:21042674-21043044 (-)
JF1/MsJ	ENSUMUG00000008555	pseudogene	Chr12:21236035-21236404 (+)
JF1/MsJ	ENSUMUG00000008649	pseudogene	Chr12:21959086-21959442 (-)
JF1/MsJ	ENSUMUG00000012389	pseudogene	Chr12:17749750-17751126 (+)
JF1/MsJ	ENSUMUG00000012370	pseudogene	Chr12:17301969-17302340 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190008352	pseudogene	Chr12:752727-753096 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	ENSMSPG00010003441	pseudogene	Chr12:18119168-18119537 (-)
WSB/EiJ	ENSIUOG00005001969	pseudogene	Chr12:15905668-15906037 (-)
WSB/EiJ	ENSIUOG00005001885	pseudogene	Chr12:16779638-16780005 (+)

Homology

• Gene Tree
  Gm48643
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27

• Ensembl
  ENSMUSG00000113411 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113411	Ensembl Gene Model | MGI Sequence Detail	370	C57BL/6J
transcript	ENSMUST00000223086	Ensembl | MGI Sequence Detail	370	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;