Gm48642 Pseudogene Detail

Summary

• Symbol
  Gm48642
• Name
  predicted gene, 48642

• Feature Type
  pseudogene
• IDs
  MGI:6098249
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:88470538-88470979 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  130 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6098249	pseudogene	Chr12:88470538-88470979 (+)
129S1/SvImJ	ENSMUSG00200051053	pseudogene	Chr12:80234403-80234844 (+)
A/J	ENSMUSG00195035401	pseudogene	Chr12:82893806-82894247 (+)
AKR/J	ENSMUSG00220049791	pseudogene	Chr12:80550820-80551261 (+)
BALB/cJ	ENSMUSG00180016506	pseudogene	Chr12:82042064-82042505 (+)
C3H/HeJ	ENSMUSG00175039434	pseudogene	Chr12:84661701-84662142 (+)
C57BL/6NJ	ENSMUSG00215046763	pseudogene	Chr12:81239355-81239796 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005033018	pseudogene	Chr12:81109084-81109524 (+)
CBA/J	ENSMUSG00210019092	pseudogene	Chr12:81637302-81637743 (+)
DBA/2J	ENSMUSG00185003041	pseudogene	Chr12:83489155-83489596 (+)
FVB/NJ	ENSMUSG00205044339	pseudogene	Chr12:80850703-80851144 (+)
JF1/MsJ	ENSUMUG00000052379	pseudogene	Chr12:88164124-88164565 (+)
LP/J	ENSMUSG00230047417	pseudogene	Chr12:90551225-90551666 (+)
NOD/ShiLtJ	ENSMUSG00190040206	pseudogene	Chr12:104500643-104501084 (-)
NZO/HlLtJ	ENSMUSG00225052940	pseudogene	Chr12:92334979-92335420 (+)
PWK/PhJ	ENSLUMG00010003517	pseudogene	Chr12:81654095-81654536 (+)
SPRET/EiJ	ENSMSPG00010001140	pseudogene	Chr12:83994722-83995163 (+)
WSB/EiJ	ENSIUOG00005047117	pseudogene	Chr12:80869006-80869447 (+)

Homology

• Gene Tree
  Gm48642
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000113578 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113578	Ensembl Gene Model | MGI Sequence Detail	442	C57BL/6J
transcript	ENSMUST00000223243	Ensembl | MGI Sequence Detail	442	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;