Gm48641 Pseudogene Detail

Summary

• Symbol
  Gm48641
• Name
  predicted gene, 48641

• Feature Type
  pseudogene
• IDs
  MGI:6098248
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:19866969-19867368 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  31 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6098248	pseudogene	Chr12:19866969-19867368 (-)
129S1/SvImJ	no annotation
A/J	ENSMUSG00195020703	pseudogene	Chr12:17644869-17645415 (+)
AKR/J	ENSMUSG00220029290	pseudogene	Chr12:16515812-16516358 (-)
BALB/cJ	ENSMUSG00180010495	pseudogene	Chr12:17250290-17250777 (-)
BALB/cJ	ENSMUSG00180010501	pseudogene	Chr12:17479685-17480231 (-)
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005006563	pseudogene	Chr12:15906647-15907131 (-)
CBA/J	ENSMUSG00210008638	pseudogene	Chr12:16074290-16074870 (+)
DBA/2J	ENSMUSG00185004145	pseudogene	Chr12:18858378-18858867 (-)
DBA/2J	ENSMUSG00185004138	pseudogene	Chr12:17070204-17070750 (+)
DBA/2J	ENSMUSG00185004141	pseudogene	Chr12:17777630-17778117 (-)
FVB/NJ	ENSMUSG00205001932	pseudogene	Chr12:16976835-16977324 (-)
JF1/MsJ	ENSUMUG00000032891	pseudogene	Chr6:105295058-105295457 (+)
JF1/MsJ	ENSUMUG00000057966	pseudogene	Chr7:21680587-21680986 (-)
JF1/MsJ	ENSUMUG00000011556	pseudogene	Chr12:16767903-16768302 (-)
JF1/MsJ	ENSUMUG00000038557	pseudogene	Chr15:34769634-34770033 (+)
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010004724	pseudogene	Chr12:17362766-17363252 (-)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005001887	pseudogene	Chr12:16825239-16825785 (+)

Homology

• Gene Tree
  Gm48641
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000114096 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000114096	Ensembl Gene Model | MGI Sequence Detail	400	C57BL/6J
transcript	ENSMUST00000223436	Ensembl | MGI Sequence Detail	400	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;