Gm48635 Pseudogene Detail

Summary

• Symbol
  Gm48635
• Name
  predicted gene, 48635

• Feature Type
  pseudogene
• IDs
  MGI:6098241
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:19708047-19708435 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  48 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6098241	pseudogene	Chr12:19708047-19708435 (+)
129S1/SvImJ	ENSMUSG00200024583	pseudogene	Chr12:15353922-15354311 (+)
A/J	ENSMUSG00195020726	pseudogene	Chr12:15660869-15661258 (+)
A/J	ENSMUSG00195020716	pseudogene	Chr12:15031821-15032195 (+)
AKR/J	no annotation
BALB/cJ	ENSMUSG00180010509	pseudogene	Chr12:15672788-15673177 (+)
C3H/HeJ	ENSMUSG00175006187	pseudogene	Chr12:15046277-15046651 (+)
C57BL/6NJ	ENSMUSG00215005782	pseudogene	Chr12:15998585-15998973 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005006570	pseudogene	Chr12:17662533-17662922 (-)
CBA/J	ENSMUSG00210008647	pseudogene	Chr12:16507046-16507435 (+)
CBA/J	ENSMUSG00210008642	pseudogene	Chr12:15058218-15058592 (+)
DBA/2J	no annotation
FVB/NJ	ENSMUSG00205001937	pseudogene	Chr12:14887632-14888021 (+)
JF1/MsJ	ENSUMUG00000011504	pseudogene	Chr12:16608965-16609353 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190014283	pseudogene	Chr12:16253096-16253470 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010004729	pseudogene	Chr12:17646199-17646587 (-)
SPRET/EiJ	ENSMSPG00010003450	pseudogene	Chr12:18093419-18093808 (-)
SPRET/EiJ	ENSMSPG00010003453	pseudogene	Chr12:15515770-15516162 (+)
SPRET/EiJ	ENSMSPG00010003455	pseudogene	Chr12:16303735-16304124 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm48635
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000113714 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113714	Ensembl Gene Model | MGI Sequence Detail	389	C57BL/6J
transcript	ENSMUST00000221889	Ensembl | MGI Sequence Detail	389	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;