Gm48616 Gene Detail

Summary

• Symbol
  Gm48616
• Name
  predicted gene, 48616

• Feature Type
  lncRNA gene
• IDs
  MGI:6098208
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr12:37060998-37152849 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  3129 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6098208	lncRNA gene	Chr12:37060998-37152849 (+)
129S1/SvImJ	ENSMUSG00200015918	lncRNA gene	Chr12:28921212-28997022 (+)
A/J	ENSMUSG00195019136	lncRNA gene	Chr12:31627257-31696358 (+)
AKR/J	ENSMUSG00220031691	lncRNA gene	Chr12:29576135-29651944 (+)
BALB/cJ	ENSMUSG00180003641	lncRNA gene	Chr12:30618798-30687908 (+)
C3H/HeJ	ENSMUSG00175017710	lncRNA gene	Chr12:33672361-33741462 (+)
C57BL/6NJ	ENSMUSG00215020554	lncRNA gene	Chr12:29994263-30070077 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005010379	lncRNA gene	Chr12:30387964-30456205 (+)
CBA/J	ENSMUSG00210008825	lncRNA gene	Chr12:30151417-30220517 (+)
DBA/2J	ENSMUSG00185020148	lncRNA gene	Chr12:32174156-32245882 (+)
FVB/NJ	ENSMUSG00205006376	lncRNA gene	Chr12:30202264-30273144 (+)
JF1/MsJ	ENSUMUG00000011096	lncRNA gene	Chr12:36313854-36382989 (+)
LP/J	ENSMUSG00230024332	lncRNA gene	Chr12:39094251-39170059 (+)
NOD/ShiLtJ	ENSMUSG00190018877	lncRNA gene	Chr12:29111409-29188502 (+)
NZO/HlLtJ	ENSMUSG00225031767	lncRNA gene	Chr12:41316196-41392006 (+)
PWK/PhJ	ENSLUMG00010012778	lncRNA gene	Chr12:30514363-30582715 (+)
SPRET/EiJ	ENSMSPG00010001958	lncRNA gene	Chr12:31221389-31308769 (+)
WSB/EiJ	ENSIUOG00005021227	lncRNA gene	Chr12:29853646-29922752 (+)

Homology

• Gene Tree
  Gm48616
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  31

• Ensembl
  ENSMUSG00000114052 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000114052	Ensembl Gene Model | MGI Sequence Detail	91852	C57BL/6J
transcript	ENSMUST00000316253	Ensembl | MGI Sequence Detail	935	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm48616:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr113246	Chr12:37063576-37063597 (+)	2,589 bp