Gm48608 Pseudogene Detail

Summary

• Symbol
  Gm48608
• Name
  predicted gene, 48608

• Feature Type
  pseudogene
• IDs
  MGI:6098194
  NCBI Gene: 115487973
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr12:6055667-6056240 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  117 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6098194	pseudogene	Chr12:6050582-6056597 (+)
129S1/SvImJ	ENSMUSG00200024442	pseudogene	Chr12:3023421-3023994 (+)
A/J	ENSMUSG00195016680	pseudogene	Chr12:3063902-3064475 (+)
AKR/J	ENSMUSG00220031959	pseudogene	Chr12:3049252-3049825 (+)
BALB/cJ	ENSMUSG00180015177	pseudogene	Chr12:3060376-3060949 (+)
C3H/HeJ	ENSMUSG00175009884	pseudogene	Chr12:3028629-3029202 (+)
C57BL/6NJ	ENSMUSG00215027276	pseudogene	Chr12:2977618-2978191 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005023915	pseudogene	Chr12:2869049-2869622 (+)
CBA/J	ENSMUSG00210013643	pseudogene	Chr12:3048296-3048869 (+)
DBA/2J	ENSMUSG00185021368	pseudogene	Chr12:3030364-3030937 (+)
FVB/NJ	ENSMUSG00205003311	pseudogene	Chr12:2829072-2829645 (+)
JF1/MsJ	ENSUMUG00000040721	pseudogene	Chr12:3038618-3039183 (+)
LP/J	ENSMUSG00230012545	pseudogene	Chr12:4858411-4858984 (+)
NOD/ShiLtJ	ENSMUSG00190008524	pseudogene	Chr12:4272654-4273227 (+)
NZO/HlLtJ	ENSMUSG00225019556	pseudogene	Chr12:6918530-6919103 (+)
PWK/PhJ	ENSLUMG00010017323	pseudogene	Chr12:2863004-2863569 (+)
SPRET/EiJ	ENSMSPG00010005380	pseudogene	Chr12:3304985-3305558 (+)
WSB/EiJ	ENSIUOG00005002411	pseudogene	Chr12:3042863-3043436 (+)

Homology

• Gene Tree
  Gm48608
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000111898 (Evidence)
• NCBI Gene
  115487973

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000111898	Ensembl Gene Model | MGI Sequence Detail	574	C57BL/6J
transcript	ENSMUST00000220422	Ensembl | MGI Sequence Detail	574	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm48608:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr112603	Chr12:6055798-6055799 (+)	132 bp