Gm48607 Gene Detail

Summary

• Symbol
  Gm48607
• Name
  predicted gene, 48607

• Feature Type
  lncRNA gene
• IDs
  MGI:6098192
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:16235560-16256747 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  687 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6098192	lncRNA gene	Chr12:16235560-16256747 (+)
129S1/SvImJ	ENSMUSG00200023462	lncRNA gene	Chr12:13283467-13305566 (+)
A/J	ENSMUSG00195021373	lncRNA gene	Chr12:13302712-13323425 (+)
AKR/J	ENSMUSG00220027951	lncRNA gene	Chr12:13381647-13402344 (+)
BALB/cJ	ENSMUSG00180009646	lncRNA gene	Chr12:13281397-13302112 (+)
C3H/HeJ	ENSMUSG00175005867	lncRNA gene	Chr12:13313451-13334159 (+)
C57BL/6NJ	ENSMUSG00215006730	lncRNA gene	Chr12:13069904-13090604 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005006508	lncRNA gene	Chr12:12801321-12822075 (+)
CBA/J	ENSMUSG00210008138	lncRNA gene	Chr12:13325295-13345999 (+)
DBA/2J	ENSMUSG00185004082	lncRNA gene	Chr12:13237015-13257706 (+)
FVB/NJ	ENSMUSG00205001714	lncRNA gene	Chr12:13184811-13206908 (+)
JF1/MsJ	ENSUMUG00000010129	lncRNA gene	Chr12:13141198-13161959 (+)
LP/J	ENSMUSG00230022912	lncRNA gene	Chr12:15057870-15078556 (+)
NOD/ShiLtJ	ENSMUSG00190014212	lncRNA gene	Chr12:14520358-14541062 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010004858	lncRNA gene	Chr12:12923033-12943719 (+)
SPRET/EiJ	ENSMSPG00010002942	lncRNA gene	Chr12:13885351-13905187 (+)
WSB/EiJ	ENSIUOG00005001714	lncRNA gene	Chr12:13293806-13314494 (+)

Homology

• Gene Tree
  Gm48607
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28

• Ensembl
  ENSMUSG00000113735 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113735	Ensembl Gene Model | MGI Sequence Detail	21188	C57BL/6J
transcript	ENSMUST00000221064	Ensembl | MGI Sequence Detail	2314	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;