Gm48573 Gene Detail

Summary

• Symbol
  Gm48573
• Name
  predicted gene, 48573

• Feature Type
  lncRNA gene
• IDs
  MGI:6098137
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:84724074-84724378 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  107 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6098137	lncRNA gene	Chr12:84724074-84724378 (+)
129S1/SvImJ	ENSMUSG00200051754	lncRNA gene	Chr12:76738566-76738870 (+)
A/J	ENSMUSG00195034300	lncRNA gene	Chr12:79358104-79358409 (+)
AKR/J	ENSMUSG00220049564	lncRNA gene	Chr12:77153165-77153469 (+)
BALB/cJ	ENSMUSG00180025318	lncRNA gene	Chr12:78395916-78396221 (+)
C3H/HeJ	ENSMUSG00175043848	lncRNA gene	Chr12:81489011-81489315 (+)
C57BL/6NJ	ENSMUSG00215046385	lncRNA gene	Chr12:77702403-77702708 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005033441	lncRNA gene	Chr12:77674660-77674945 (+)
CBA/J	ENSMUSG00210046790	lncRNA gene	Chr12:77902254-77902558 (+)
DBA/2J	ENSMUSG00185043996	lncRNA gene	Chr12:79759455-79759759 (+)
FVB/NJ	ENSMUSG00205041438	lncRNA gene	Chr12:77570921-77571225 (+)
JF1/MsJ	ENSUMUG00000048293	lncRNA gene	Chr12:83755596-83755904 (+)
LP/J	ENSMUSG00230047015	lncRNA gene	Chr12:86821753-86822059 (+)
NOD/ShiLtJ	ENSMUSG00190049084	lncRNA gene	Chr12:76959238-76959544 (+)
NZO/HlLtJ	ENSMUSG00225053353	lncRNA gene	Chr12:88858816-88859120 (+)
PWK/PhJ	ENSLUMG00010029157	lncRNA gene	Chr12:77772508-77772814 (+)
SPRET/EiJ	ENSMSPG00010021909	lncRNA gene	Chr12:79591642-79591926 (+)
WSB/EiJ	ENSIUOG00005046591	lncRNA gene	Chr12:77588275-77588578 (+)

Homology

• Gene Tree
  Gm48573
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000113317 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113317	Ensembl Gene Model | MGI Sequence Detail	305	C57BL/6J
transcript	ENSMUST00000221117	Ensembl | MGI Sequence Detail	177	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;