Gm48572 Pseudogene Detail

Summary

• Symbol
  Gm48572
• Name
  predicted gene, 48572

• Feature Type
  pseudogene
• IDs
  MGI:6098136
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:88305209-88305590 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  109 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6098136	pseudogene	Chr12:88305209-88305590 (+)
129S1/SvImJ	ENSMUSG00200050649	pseudogene	Chr12:80064080-80064461 (+)
A/J	ENSMUSG00195036033	pseudogene	Chr12:82723483-82723864 (+)
AKR/J	ENSMUSG00220049930	pseudogene	Chr12:80380502-80380883 (+)
BALB/cJ	ENSMUSG00180016329	pseudogene	Chr12:81876735-81877116 (+)
C3H/HeJ	ENSMUSG00175038144	pseudogene	Chr12:84491373-84491754 (+)
C57BL/6NJ	ENSMUSG00215046776	pseudogene	Chr12:81074011-81074392 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005033525	pseudogene	Chr12:80945784-80946165 (+)
CBA/J	ENSMUSG00210018839	pseudogene	Chr12:81466978-81467359 (+)
DBA/2J	ENSMUSG00185002765	pseudogene	Chr12:83318835-83319216 (+)
FVB/NJ	ENSMUSG00205041980	pseudogene	Chr12:80680396-80680777 (+)
JF1/MsJ	ENSUMUG00000048462	pseudogene	Chr12:88000304-88000685 (+)
LP/J	ENSMUSG00230047457	pseudogene	Chr12:90380919-90381300 (+)
NOD/ShiLtJ	ENSMUSG00190038147	pseudogene	Chr12:104674289-104674670 (-)
NZO/HlLtJ	ENSMUSG00225053006	pseudogene	Chr12:92169647-92170028 (+)
PWK/PhJ	ENSLUMG00010003635	pseudogene	Chr12:81485421-81485802 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005045337	pseudogene	Chr12:80698741-80699122 (+)

Homology

• Gene Tree
  Gm48572
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000113376 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113376	Ensembl Gene Model | MGI Sequence Detail	382	C57BL/6J
transcript	ENSMUST00000222555	Ensembl | MGI Sequence Detail	382	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;