Gm48571 Gene Detail

Summary

• Symbol
  Gm48571
• Name
  predicted gene, 48571

• Feature Type
  lncRNA gene
• IDs
  MGI:6098134
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:41533432-41538201 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  224 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6098134	lncRNA gene	Chr13:41533432-41538201 (+)
129S1/SvImJ	ENSMUSG00200012860	lncRNA gene	Chr13:38806542-38811313 (+)
A/J	ENSMUSG00195034488	lncRNA gene	Chr13:37866425-37871196 (+)
AKR/J	ENSMUSG00220033083	lncRNA gene	Chr13:37653655-37658425 (+)
BALB/cJ	ENSMUSG00180008195	lncRNA gene	Chr13:38172888-38177659 (+)
C3H/HeJ	ENSMUSG00175013695	lncRNA gene	Chr13:38137769-38142538 (+)
C57BL/6NJ	ENSMUSG00215016193	lncRNA gene	Chr13:38274502-38279271 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005035874	lncRNA gene	Chr13:38169333-38174212 (+)
CBA/J	ENSMUSG00210011881	lncRNA gene	Chr13:38143434-38148203 (+)
DBA/2J	ENSMUSG00185033865	lncRNA gene	Chr13:38937766-38942535 (+)
FVB/NJ	ENSMUSG00205033790	lncRNA gene	Chr13:37892635-37897406 (+)
JF1/MsJ	ENSUMUG00000036335	lncRNA gene	Chr13:38475728-38480591 (+)
LP/J	ENSMUSG00230017019	lncRNA gene	Chr13:48275618-48280387 (+)
NOD/ShiLtJ	ENSMUSG00190013144	lncRNA gene	Chr13:38337025-38341796 (+)
NZO/HlLtJ	ENSMUSG00225036648	lncRNA gene	Chr13:42044647-42049416 (+)
PWK/PhJ	ENSLUMG00010029412	lncRNA gene	Chr13:37328595-37333366 (+)
SPRET/EiJ	ENSMSPG00010010708	lncRNA gene	Chr13:37379593-37384662 (+)
WSB/EiJ	ENSIUOG00005030434	lncRNA gene	Chr13:37475723-37480495 (+)

Homology

• Gene Tree
  Gm48571
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000114914 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000114914	Ensembl Gene Model | MGI Sequence Detail	4770	C57BL/6J
transcript	ENSMUST00000225967	Ensembl | MGI Sequence Detail	140	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;