Gm48570 Gene Detail

Summary

• Symbol
  Gm48570
• Name
  predicted gene, 48570

• Feature Type
  lncRNA gene
• IDs
  MGI:6098132
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:41555747-41556829 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  114 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6098132	lncRNA gene	Chr13:41555747-41556829 (+)
129S1/SvImJ	ENSMUSG00200012907	lncRNA gene	Chr13:38828949-38830011 (+)
A/J	ENSMUSG00195034616	lncRNA gene	Chr13:37888825-37889887 (+)
AKR/J	ENSMUSG00220033226	lncRNA gene	Chr13:37676059-37677121 (+)
BALB/cJ	ENSMUSG00180008208	lncRNA gene	Chr13:38195288-38196350 (+)
C3H/HeJ	ENSMUSG00175013744	lncRNA gene	Chr13:38160167-38161229 (+)
C57BL/6NJ	ENSMUSG00215016467	lncRNA gene	Chr13:38296905-38297967 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005036087	lncRNA gene	Chr13:38191812-38192876 (+)
CBA/J	ENSMUSG00210011892	lncRNA gene	Chr13:38165828-38166890 (+)
DBA/2J	ENSMUSG00185033971	lncRNA gene	Chr13:38960168-38961230 (+)
FVB/NJ	ENSMUSG00205034122	lncRNA gene	Chr13:37915047-37916109 (+)
JF1/MsJ	ENSUMUG00000036591	lncRNA gene	Chr13:38498135-38499199 (+)
LP/J	ENSMUSG00230018037	lncRNA gene	Chr13:48298013-48299075 (+)
NOD/ShiLtJ	ENSMUSG00190013223	lncRNA gene	Chr13:38359430-38360492 (+)
NZO/HlLtJ	ENSMUSG00225036923	lncRNA gene	Chr13:42067049-42068111 (+)
PWK/PhJ	ENSLUMG00010029549	lncRNA gene	Chr13:37351000-37352062 (+)
SPRET/EiJ	ENSMSPG00010010757	lncRNA gene	Chr13:37402188-37403251 (+)
WSB/EiJ	ENSIUOG00005030518	lncRNA gene	Chr13:37498108-37499170 (+)

Homology

• Gene Tree
  Gm48570
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000114552 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000114552	Ensembl Gene Model | MGI Sequence Detail	1083	C57BL/6J
transcript	ENSMUST00000224720	Ensembl | MGI Sequence Detail	413	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;