Gm48561 Pseudogene Detail

Summary

• Symbol
  Gm48561
• Name
  predicted gene, 48561

• Feature Type
  pseudogene
• IDs
  MGI:6098118
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:88237135-88237384 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  24 from dbSNP Build 142
• Strain Annotations
  30

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6098118	pseudogene	Chr12:88237135-88237384 (-)
129S1/SvImJ	ENSMUSG00200050739	pseudogene	Chr12:79988093-79988342 (-)
A/J	ENSMUSG00195036352	pseudogene	Chr12:82336581-82336830 (-)
A/J	ENSMUSG00195036541	pseudogene	Chr12:82499606-82499855 (-)
AKR/J	ENSMUSG00220049336	pseudogene	Chr12:80209797-80210046 (+)
BALB/cJ	ENSMUSG00180016892	pseudogene	Chr12:81416219-81416468 (+)
BALB/cJ	ENSMUSG00180016542	pseudogene	Chr12:81808657-81808906 (-)
C3H/HeJ	ENSMUSG00175039085	pseudogene	Chr12:84331649-84331901 (+)
C57BL/6NJ	ENSMUSG00215046548	pseudogene	Chr12:80992607-80992854 (-)
C57BL/6NJ	ENSMUSG00215047769	pseudogene	Chr12:80600236-80600485 (+)
C57BL/6NJ	ENSMUSG00215047798	pseudogene	Chr12:81005948-81006195 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005035134	pseudogene	Chr12:80816886-80817135 (-)
CBA/J	ENSMUSG00210047312	pseudogene	Chr12:80905255-80905504 (+)
CBA/J	ENSMUSG00210048455	pseudogene	Chr12:81243115-81243364 (-)
CBA/J	ENSMUSG00210048436	pseudogene	Chr12:81078951-81079200 (-)
DBA/2J	ENSMUSG00185002751	pseudogene	Chr12:82757166-82757415 (+)
DBA/2J	ENSMUSG00185003142	pseudogene	Chr12:83094987-83095236 (-)
DBA/2J	ENSMUSG00185003141	pseudogene	Chr12:82930839-82931088 (-)
FVB/NJ	ENSMUSG00205044099	pseudogene	Chr12:80576148-80576397 (+)
JF1/MsJ	ENSUMUG00000049597	pseudogene	Chr12:87926128-87926377 (-)
JF1/MsJ	ENSUMUG00000053188	pseudogene	Chr12:86775825-86776074 (+)
JF1/MsJ	ENSUMUG00000053550	pseudogene	Chr12:87677551-87677800 (-)
JF1/MsJ	ENSUMUG00000053459	pseudogene	Chr12:87482752-87482997 (-)
LP/J	ENSMUSG00230047610	pseudogene	Chr12:90304940-90305189 (-)
NOD/ShiLtJ	ENSMUSG00190027126	pseudogene	Chr12:104749144-104749393 (+)
NZO/HlLtJ	ENSMUSG00225053112	pseudogene	Chr12:92101575-92101824 (-)
PWK/PhJ	ENSLUMG00010003793	pseudogene	Chr12:81416564-81416813 (-)
PWK/PhJ	ENSLUMG00010031959	pseudogene	Chr12:80798140-80798389 (+)
SPRET/EiJ	ENSMSPG00010001164	pseudogene	Chr12:83783967-83784216 (-)
WSB/EiJ	ENSIUOG00005047236	pseudogene	Chr12:80622738-80622987 (-)

Homology

• Gene Tree
  Gm48561
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  32

• Ensembl
  ENSMUSG00000114145 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000114145	Ensembl Gene Model | MGI Sequence Detail	250	C57BL/6J
transcript	ENSMUST00000223405	Ensembl | MGI Sequence Detail	250	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;