Gm48553 Pseudogene Detail

Summary

• Symbol
  Gm48553
• Name
  predicted gene, 48553

• Feature Type
  pseudogene
• IDs
  MGI:6098107
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:88192307-88192714 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  45 from dbSNP Build 142
• Strain Annotations
  20

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6098107	pseudogene	Chr12:88192307-88192714 (-)
129S1/SvImJ	ENSMUSG00200051899	pseudogene	Chr12:79947082-79947489 (-)
129S1/SvImJ	ENSMUSG00200050861	pseudogene	Chr12:79798765-79799172 (-)
A/J	ENSMUSG00195034321	pseudogene	Chr12:82458135-82458542 (-)
A/J	ENSMUSG00195036625	pseudogene	Chr12:82606483-82606890 (-)
AKR/J	no annotation
BALB/cJ	ENSMUSG00180016037	pseudogene	Chr12:81763820-81764227 (-)
C3H/HeJ	no annotation
C57BL/6NJ	ENSMUSG00215046607	pseudogene	Chr12:80947842-80948249 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005035202	pseudogene	Chr12:80689899-80690306 (-)
CBA/J	ENSMUSG00210046904	pseudogene	Chr12:81201662-81202069 (-)
CBA/J	ENSMUSG00210048496	pseudogene	Chr12:81349986-81350393 (-)
DBA/2J	ENSMUSG00185002902	pseudogene	Chr12:83053547-83053954 (-)
DBA/2J	ENSMUSG00185003152	pseudogene	Chr12:83201852-83202259 (-)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000053487	pseudogene	Chr12:87580115-87580522 (-)
JF1/MsJ	ENSUMUG00000050517	pseudogene	Chr12:86814597-86815004 (+)
JF1/MsJ	ENSUMUG00000053088	pseudogene	Chr12:87419226-87419633 (-)
LP/J	ENSMUSG00230047805	pseudogene	Chr12:90263931-90264338 (-)
LP/J	ENSMUSG00230047685	pseudogene	Chr12:90115621-90116028 (-)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225053102	pseudogene	Chr12:92056743-92057150 (-)
PWK/PhJ	ENSLUMG00010003750	pseudogene	Chr12:81378057-81378464 (-)
PWK/PhJ	ENSLUMG00010003843	pseudogene	Chr12:80836549-80836956 (+)
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm48553
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000113793 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113793	Ensembl Gene Model | MGI Sequence Detail	408	C57BL/6J
transcript	ENSMUST00000220822	Ensembl | MGI Sequence Detail	408	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;