Smim44 Gene Detail

Summary

• Symbol
  Smim44
• Name
  small integral membrane protein 44
• Synonyms
  Gm48552

• Feature Type
  protein coding gene
• IDs
  MGI:6098105
  NCBI Gene: 117934532
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr10:81226151-81227389 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  73 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6098105	protein coding gene	Chr10:81224839-81227389 (+)
129S1/SvImJ	ENSMUSG00200047688	protein coding gene	Chr10:77851990-77854252 (+)
A/J	ENSMUSG00195044163	protein coding gene	Chr10:78247259-78249521 (+)
AKR/J	ENSMUSG00220047134	protein coding gene	Chr10:77844938-77847200 (+)
BALB/cJ	ENSMUSG00180049655	protein coding gene	Chr10:78257707-78259969 (+)
C3H/HeJ	ENSMUSG00175047329	protein coding gene	Chr10:78128458-78130720 (+)
C57BL/6NJ	ENSMUSG00215049634	protein coding gene	Chr10:77870325-77872587 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005050437	protein coding gene	Chr10:77752459-77754721 (+)
CBA/J	ENSMUSG00210049759	protein coding gene	Chr10:77984492-77986754 (+)
DBA/2J	ENSMUSG00185046918	protein coding gene	Chr10:78326912-78329174 (+)
FVB/NJ	ENSMUSG00205047554	protein coding gene	Chr10:78039740-78042002 (+)
JF1/MsJ	ENSUMUG00000026057	protein coding gene	Chr10:79555088-79557350 (+)
LP/J	ENSMUSG00230050294	protein coding gene	Chr10:80096500-80098762 (+)
NOD/ShiLtJ	ENSMUSG00190048096	protein coding gene	Chr10:78240615-78242877 (+)
NZO/HlLtJ	ENSMUSG00225052287	protein coding gene	Chr10:84383069-84385331 (+)
PWK/PhJ	ENSLUMG00010045421	protein coding gene	Chr10:77918257-77920518 (+)
SPRET/EiJ	ENSMSPG00010032735	protein coding gene	Chr10:79529082-79531358 (+)
WSB/EiJ	ENSIUOG00005050380	protein coding gene	Chr10:77981096-77983360 (+)

Homology

• Human Ortholog
  SMIM44, small integral membrane protein 44

• Vertebrate Orthologs
  3

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  SMIM44, small integral membrane protein 44
  
• Synonyms
  CTF5, NFI1_HUMAN, NFI2_HUMAN
• Links
  HGNC:55815

  NCBI Gene ID: 122405565

  UniProt: A0A286YF18

  
  
• Chr Location
  19p13.3; chr19:3482110-3483441 (-)  GRCh38

---

• MGI Vertebrate Homology
  Smim44 stringent orthology
  1 human;1 mouse;1 rat;1 zebrafish
  
• HCOP
  vertebrate homology predictions: SMIM44
• Gene Tree
  Smim44
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000114004 (Evidence)
• NCBI Gene
  117934532

Representative Sequences			Length	Strain/Species
genomic	117934532	NCBI Gene Model | MGI Sequence Detail	1239	C57BL/6J
transcript	NM_001384181	RefSeq | MGI Sequence Detail	1035	C57BL/6
polypeptide	NP_001371110	RefSeq | MGI Sequence Detail	135	C57BL/6

Protein
Information

• UniProt
  1 Sequence

Other
Accession IDs

MGI:8330136

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Smim44:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr94750	Chr10:81226145-81226160 (+)	2 bp
Tssr94751	Chr10:81226173-81226203 (+)	37 bp