Gm48550 Gene Detail

Summary

• Symbol
  Gm48550
• Name
  predicted gene, 48550

• Feature Type
  lncRNA gene
• IDs
  MGI:6098101
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:54122963-54130685 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  316 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6098101	lncRNA gene	Chr13:54122963-54130685 (+)
129S1/SvImJ	ENSMUSG00200017355	lncRNA gene	Chr13:50990657-50997415 (+)
A/J	ENSMUSG00195044875	lncRNA gene	Chr13:50460355-50467100 (+)
AKR/J	ENSMUSG00220009588	lncRNA gene	Chr13:50002501-50010226 (+)
BALB/cJ	ENSMUSG00180016620	lncRNA gene	Chr13:50711660-50718409 (+)
C3H/HeJ	ENSMUSG00175041659	lncRNA gene	Chr13:50498199-50504944 (+)
C57BL/6NJ	ENSMUSG00215040398	lncRNA gene	Chr13:50523620-50531342 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005040077	lncRNA gene	Chr13:50915296-50922042 (+)
CBA/J	ENSMUSG00210039417	lncRNA gene	Chr13:50703047-50709787 (+)
DBA/2J	ENSMUSG00185018427	lncRNA gene	Chr13:51545911-51553636 (+)
FVB/NJ	ENSMUSG00205044004	lncRNA gene	Chr13:50352681-50360403 (+)
JF1/MsJ	ENSUMUG00000038427	lncRNA gene	Chr13:50945848-50952574 (+)
LP/J	ENSMUSG00230035202	lncRNA gene	Chr13:60873322-60880080 (+)
NOD/ShiLtJ	ENSMUSG00190037355	lncRNA gene	Chr13:50589508-50597229 (+)
NZO/HlLtJ	ENSMUSG00225035207	lncRNA gene	Chr13:54617756-54625479 (+)
PWK/PhJ	ENSLUMG00010021184	lncRNA gene	Chr13:49809607-49816367 (+)
SPRET/EiJ	ENSMSPG00010031480	lncRNA gene	Chr13:50238500-50244513 (+)
WSB/EiJ	ENSIUOG00005028023	lncRNA gene	Chr13:50013204-50020940 (+)

Homology

• Gene Tree
  Gm48550
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000113882 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113882	Ensembl Gene Model | MGI Sequence Detail	7723	C57BL/6J
transcript	ENSMUST00000222780	Ensembl | MGI Sequence Detail	2452	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;