Gm48540 Pseudogene Detail

Summary

• Symbol
  Gm48540
• Name
  predicted gene, 48540

• Feature Type
  pseudogene
• IDs
  MGI:6098086
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:19345770-19345878 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  30 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6098086	pseudogene	Chr12:19345770-19345878 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	ENSMUSG00175006108	pseudogene	Chr12:15008207-15008315 (-)
C57BL/6NJ	ENSMUSG00215007564	pseudogene	Chr12:15848167-15848275 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	ENSMUSG00185004050	pseudogene	Chr12:16841033-16841141 (+)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000007984	pseudogene	Chr12:21051531-21051639 (+)
JF1/MsJ	ENSUMUG00000009761	pseudogene	Chr12:16246315-16246423 (-)
LP/J	ENSMUSG00230007554	pseudogene	Chr12:22345687-22345795 (-)
LP/J	ENSMUSG00230007802	pseudogene	Chr12:21119557-21119663 (+)
LP/J	ENSMUSG00230008074	pseudogene	Chr12:25522381-25522487 (-)
LP/J	ENSMUSG00230007976	pseudogene	Chr12:23469522-23469628 (-)
LP/J	ENSMUSG00230008014	pseudogene	Chr12:24471769-24471875 (+)
LP/J	ENSMUSG00230023192	pseudogene	Chr12:18340586-18340692 (-)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225035230	pseudogene	Chr12:23322120-23322226 (+)
NZO/HlLtJ	ENSMUSG00225035413	pseudogene	Chr12:27705451-27705557 (-)
NZO/HlLtJ	ENSMUSG00225030394	pseudogene	Chr12:20445143-20445249 (-)
NZO/HlLtJ	ENSMUSG00225034902	pseudogene	Chr12:26084008-26084116 (-)
NZO/HlLtJ	ENSMUSG00225035326	pseudogene	Chr12:25419920-25420026 (-)
NZO/HlLtJ	ENSMUSG00225035367	pseudogene	Chr12:26654855-26654961 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005001806	pseudogene	Chr12:15957719-15957827 (-)

Homology

• Gene Tree
  Gm48540
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000113408 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113408	Ensembl Gene Model | MGI Sequence Detail	109	C57BL/6J
transcript	ENSMUST00000222201	Ensembl | MGI Sequence Detail	109	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;