Gm48539 Gene Detail

Summary

• Symbol
  Gm48539
• Name
  predicted gene, 48539

• Feature Type
  lncRNA gene
• IDs
  MGI:6098084
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:15302249-15351271 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1639 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6098084	lncRNA gene	Chr12:15302249-15351271 (-)
129S1/SvImJ	ENSMUSG00200023533	lncRNA gene	Chr12:12373828-12396478 (-)
A/J	ENSMUSG00195021050	lncRNA gene	Chr12:12383933-12408580 (-)
AKR/J	ENSMUSG00220030359	lncRNA gene	Chr12:12475994-12498682 (-)
BALB/cJ	ENSMUSG00180009977	lncRNA gene	Chr12:12369820-12394475 (-)
C3H/HeJ	ENSMUSG00175006051	lncRNA gene	Chr12:12408476-12431165 (-)
C57BL/6NJ	ENSMUSG00215007580	lncRNA gene	Chr12:12175598-12198231 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005005963	lncRNA gene	Chr12:11918474-11942199 (-)
CBA/J	ENSMUSG00210008341	lncRNA gene	Chr12:12420302-12442988 (-)
DBA/2J	ENSMUSG00185003990	lncRNA gene	Chr12:12340004-12362689 (-)
FVB/NJ	ENSMUSG00205002073	lncRNA gene	Chr12:12157996-12180682 (-)
JF1/MsJ	ENSUMUG00000008857	lncRNA gene	Chr12:12240614-12267797 (-)
LP/J	ENSMUSG00230022320	lncRNA gene	Chr12:14144023-14166709 (-)
NOD/ShiLtJ	ENSMUSG00190013498	lncRNA gene	Chr12:13621993-13644643 (-)
NZO/HlLtJ	ENSMUSG00225030001	lncRNA gene	Chr12:16248196-16270839 (-)
PWK/PhJ	ENSLUMG00010004956	lncRNA gene	Chr12:12017355-12045273 (-)
SPRET/EiJ	ENSMSPG00010003075	lncRNA gene	Chr12:12932536-12961462 (-)
WSB/EiJ	ENSIUOG00005001959	lncRNA gene	Chr12:12388671-12411350 (-)

Homology

• Gene Tree
  Gm48539
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000113734 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113734	Ensembl Gene Model | MGI Sequence Detail	49023	C57BL/6J
transcript	ENSMUST00000220591	Ensembl | MGI Sequence Detail	923	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;